Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0147F.1_g065870 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.1e-220 769.6 373 100.0
Hma1.2p1_2965F.1_g330973 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.1e-220 769.6 373 100.0
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.6e-195 686.0 330 98.2
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 6.1e-139 498.0 333 70.3
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 2.0e-126 456.4 332 66.0
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 1.5e-124 450.3 333 64.0
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 3.2e-124 449.1 333 63.7
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 5.2e-122 441.8 333 64.6
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 6.8e-122 441.4 331 64.4
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 4.4e-121 438.7 333 61.6
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 5.7e-121 438.3 328 64.6
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 1.8e-119 433.3 338 62.4
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 1.2e-115 420.6 329 60.5
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 2.0e-113 413.3 326 58.9
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 1.7e-112 410.2 330 59.7
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 1.8e-111 406.8 335 59.1
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 3.2e-111 406.0 336 57.7
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 2.0e-110 403.3 330 58.8
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 2.7e-110 402.9 330 58.2
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 4.6e-110 402.1 331 58.0
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 4.6e-110 402.1 330 58.2
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 1.0e-109 401.0 328 57.3
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 1.7e-109 400.2 331 57.7
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 1.7e-109 400.2 333 58.0
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 3.0e-109 399.4 328 58.5
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 5.0e-109 398.7 329 58.7
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 8.6e-109 397.9 328 57.3
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 2.5e-108 396.4 337 58.5
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 7.3e-108 394.8 326 58.9
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 9.5e-108 394.4 328 56.7
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 3.6e-107 392.5 329 57.8
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 8.0e-107 391.3 328 56.7
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 1.4e-106 390.6 330 57.0
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 2.3e-106 389.8 334 57.2
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 2.3e-106 389.8 330 58.8
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 3.1e-106 389.4 333 57.4
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 5.2e-106 388.7 326 58.0
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 5.2e-106 388.7 330 59.1
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 6.8e-106 388.3 328 56.7
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 8.9e-106 387.9 330 57.6
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 8.9e-106 387.9 326 56.7
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 8.9e-106 387.9 332 56.6
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 5.8e-105 385.2 331 56.5
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 2.2e-104 383.3 337 54.9
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 4.9e-104 382.1 329 55.9
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 8.3e-104 381.3 331 55.9
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 8.3e-104 381.3 331 56.5
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.4e-103 380.6 333 55.3
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 5.4e-103 378.6 333 55.9
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 2.7e-102 376.3 330 56.7
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 6.0e-102 375.2 333 54.4
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 3.3e-100 369.4 330 56.1
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 2.8e-99 366.3 309 54.7
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 2.8e-99 366.3 328 54.0
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 4.7e-99 365.5 333 53.5
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 1.4e-98 364.0 331 52.9
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 1.8e-98 363.6 328 53.0
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.3e-98 363.2 328 53.7
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 3.1e-98 362.8 325 55.7
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 1.2e-97 360.9 326 52.5
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 1.2e-97 360.9 331 53.2
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 1.5e-97 360.5 328 52.4
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.0e-97 360.1 333 52.3
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 2.6e-97 359.8 326 52.5
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 2.6e-97 359.8 328 53.0
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 5.8e-97 358.6 332 53.3
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 8.3e-96 354.8 331 52.0
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 1.4e-95 354.0 325 54.5
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 9.2e-95 351.3 331 52.0
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 1.2e-94 350.9 333 52.6
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 2.1e-94 350.1 333 51.4
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 6.0e-94 348.6 325 51.1
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 3.9e-93 345.9 325 51.4
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 6.6e-93 345.1 332 52.1
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 1.5e-92 344.0 325 49.5
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 3.3e-92 342.8 331 50.5
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 5.6e-92 342.0 330 51.5
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 7.3e-92 341.7 310 52.3
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 6.2e-91 338.6 325 51.1
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 6.2e-91 338.6 325 51.1
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 6.2e-91 338.6 336 50.9
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 1.4e-90 337.4 325 50.8
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 1.4e-90 337.4 331 49.5
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 2.4e-90 336.7 236 65.7
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 3.1e-90 336.3 325 50.2
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 3.1e-90 336.3 325 50.2
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 4.0e-90 335.9 341 48.1
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 4.0e-90 335.9 328 51.5
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 5.2e-90 335.5 325 50.8
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 8.9e-90 334.7 325 49.5
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 8.9e-90 334.7 328 50.6
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 8.9e-90 334.7 331 51.4
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 1.2e-89 334.3 328 50.6
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 1.2e-89 334.3 328 49.7
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 1.5e-89 334.0 328 48.5
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 2.0e-89 333.6 328 49.7
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 5.8e-89 332.0 325 49.2
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 5.8e-89 332.0 286 55.2
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 5.8e-89 332.0 313 50.2
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 5.8e-89 332.0 328 50.6
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 9.9e-89 331.3 331 50.5
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 9.9e-89 331.3 303 50.8
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 8.4e-88 328.2 330 49.1
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 3.2e-87 326.2 325 48.3
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 4.1e-87 325.9 328 49.1
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 1.6e-86 323.9 332 50.6
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 1.3e-85 320.9 333 48.9
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 1.7e-85 320.5 325 48.9
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 5.1e-85 318.9 328 48.8
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 1.5e-84 317.4 341 49.9
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 1.9e-84 317.0 325 48.6
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 1.9e-84 317.0 332 48.8
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 4.3e-84 315.8 292 53.4
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 9.6e-84 314.7 325 48.3
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 6.2e-83 312.0 331 48.3
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 3.1e-82 309.7 332 48.5
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 3.4e-81 306.2 265 57.0
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 3.2e-79 299.7 327 47.1
unitig_699.g19717 Utricularia gibba HOM05D004718 ORTHO05D005838 3.9e-77 292.7 276 50.7
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 1.8e-74 283.9 326 46.0
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 2.0e-73 280.4 294 51.4
BcaC01g02422 Brassica carinata HOM05D004718 ORTHO05D005838 2.2e-72 276.9 249 54.2
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 1.2e-70 271.2 252 49.6
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 1.0e-69 268.1 325 39.7
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 5.1e-69 265.8 328 44.2
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 5.6e-68 262.3 328 44.5
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 1.8e-66 257.3 292 42.8
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 4.9e-56 222.6 325 38.2
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 7.4e-52 208.8 278 35.6
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 1.3e-48 198.0 317 34.4
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 2.4e-18 97.4 64 62.5
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 3.1e-10 70.5 159 28.3
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.1e-06 57.8 46 54.3
SEGI_25158 Sequoiadendron giganteum HOM05D004718 ORTHO05D046641 2.8e-06 57.4 77 41.6


User provided reference genes

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