Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0147F.1_g065830 Hydrangea macrophylla HOM05D005309 ORTHO05D006648 1.7e-210 735.7 368 100.0
Hma1.2p1_0147F.1_g065840 Hydrangea macrophylla HOM05D005309 ORTHO05D006648 1.9e-169 599.4 293 100.0
Dinv18821 Davidia involucrata HOM05D005309 ORTHO05D006648 2.4e-140 502.7 329 78.1
CSS0009662 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 1.7e-112 410.2 300 69.3
CSS0016258 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 6.3e-112 408.3 300 69.0
Atru.chr6.2050 Acer truncatum HOM05D005309 ORTHO05D006648 4.5e-110 402.1 295 69.8
Cfa023077 Carpinus fangiana HOM05D005309 ORTHO05D006648 7.7e-110 401.4 299 68.6
Thecc.01G169500 Theobroma cacao HOM05D005309 ORTHO05D006648 6.5e-109 398.3 322 64.9
TWI23G0800 Tripterygium wilfordii HOM05D005309 ORTHO05D006648 2.5e-108 396.4 321 64.2
GSVIVG01020840001 Vitis vinifera HOM05D005309 ORTHO05D006648 2.5e-108 396.4 293 69.6
MSTRG.14909 Avicennia marina HOM05D005309 ORTHO05D006648 5.5e-108 395.2 320 63.8
Duzib133G0867 Durio zibethinus HOM05D005309 ORTHO05D006648 1.2e-107 394.0 324 64.2
Nitab4.5_0005142g0010 Nicotiana tabacum HOM05D005309 ORTHO05D006648 2.3e-106 389.8 320 64.4
Manes.02G208560 Manihot esculenta HOM05D005309 ORTHO05D006648 3.9e-106 389.0 331 63.1
Solyc07g045070.3 Solanum lycopersicum HOM05D005309 ORTHO05D006648 6.7e-106 388.3 321 64.5
Potri.005G204900 Populus trichocarpa HOM05D005309 ORTHO05D006648 1.5e-105 387.1 321 63.6
Sed0027803 Sechium edule HOM05D005309 ORTHO05D006648 3.3e-105 386.0 327 62.7
Ciclev10031016m.g Citrus clementina HOM05D005309 ORTHO05D006648 4.4e-105 385.6 322 64.0
PGSC0003DMG400017390 Solanum tuberosum HOM05D005309 ORTHO05D006648 4.4e-105 385.6 321 64.2
Sopen07g023630 Solanum pennellii HOM05D005309 ORTHO05D006648 7.4e-105 384.8 321 64.2
Gohir.A11G157100 Gossypium hirsutum HOM05D005309 ORTHO05D006648 9.7e-105 384.4 323 63.8
Sabra05G0155700 Salix brachista HOM05D005309 ORTHO05D006648 3.7e-104 382.5 323 62.5
CsaV3_4G031990 Cucumis sativus L. HOM05D005309 ORTHO05D006648 4.8e-104 382.1 321 63.9
DCAR_016942 Daucus carota HOM05D005309 ORTHO05D006648 1.4e-103 380.6 320 61.9
Eucgr.K01225 Eucalyptus grandis HOM05D005309 ORTHO05D006648 2.4e-103 379.8 307 62.5
Gorai.007G174900 Gossypium raimondii HOM05D005309 ORTHO05D006648 3.1e-103 379.4 290 68.6
TAR627G0226 Trochodendron aralioides HOM05D005309 ORTHO05D006648 3.1e-103 379.4 308 66.2
Lj1A593G32 Lonicera japonica HOM05D005309 ORTHO05D006648 9.1e-103 377.9 295 67.5
Gohir.D11G164100 Gossypium hirsutum HOM05D005309 ORTHO05D006648 2.0e-102 376.7 290 67.9
MELO3C022960.2 Cucumis melo HOM05D005309 ORTHO05D006648 1.7e-101 373.6 292 66.8
Oeu029978.1 Olea europaea HOM05D005309 ORTHO05D006648 1.7e-101 373.6 293 66.6
ClCG11G016530 Citrullus lanatus HOM05D005309 ORTHO05D006648 2.2e-101 373.2 292 65.4
PGR142G1004 Punica granatum HOM05D005309 ORTHO05D006648 3.2e-100 369.4 322 59.6
QL11p000196 Quercus lobata HOM05D005309 ORTHO05D006648 3.2e-100 369.4 340 60.9
Rhsim12G0010200 Rhododendron simsii HOM05D005309 ORTHO05D006648 7.2e-100 368.2 326 62.0
Migut.M00059 Erythranthe guttata HOM05D005309 ORTHO05D006648 1.6e-99 367.1 323 61.0
Nn3g20733 Nelumbo nucifera HOM05D005309 ORTHO05D006648 2.1e-99 366.7 328 59.8
Cpa.g.sc50.107 Carica papaya HOM05D005309 ORTHO05D006648 4.7e-99 365.5 293 64.2
Cc05_g01700 Coffea canephora HOM05D005309 ORTHO05D006648 6.1e-99 365.2 300 63.0
THA.LOC104826242 Tarenaya hassleriana HOM05D005309 ORTHO05D006648 6.1e-99 365.2 310 60.6
arahy.Tifrunner.gnm1.ann1.9TU2QX Arachis hypogaea HOM05D005309 ORTHO05D006648 1.8e-98 363.6 341 60.1
Glyma.14G030100 Glycine max HOM05D005309 ORTHO05D006648 3.0e-98 362.8 325 60.9
CARHR006170 Cardamine hirsuta HOM05D005309 ORTHO05D006648 6.7e-98 361.7 333 57.7
HanXRQChr01g0028511 Helianthus annuus HOM05D005309 ORTHO05D006648 8.8e-98 361.3 326 58.6
Carub.0001s0593 Capsella rubella HOM05D005309 ORTHO05D006648 1.5e-97 360.5 334 59.0
arahy.Tifrunner.gnm1.ann1.JRP0UJ Arachis hypogaea HOM05D005309 ORTHO05D006648 2.6e-97 359.8 318 60.7
Lalb_Chr04g0248901 Lupinus albus HOM05D005309 ORTHO05D006648 3.3e-97 359.4 326 59.8
CiPaw.04G138300 Carya illinoinensis HOM05D005309 ORTHO05D006648 4.4e-97 359.0 329 59.0
Sp1g05320 Schrenkiella parvula HOM05D005309 ORTHO05D006648 7.4e-97 358.2 337 58.2
Hund02144 Selenicereus undatus HOM05D005309 ORTHO05D006648 7.4e-97 358.2 317 61.2
Aqoxy4G00092 Aquilegia oxysepala HOM05D005309 ORTHO05D006648 9.7e-97 357.8 313 60.7
SalBow7G0619 Salvia bowleyana HOM05D005309 ORTHO05D006648 1.3e-96 357.5 366 54.1
CAN.G275.11 Capsicum annuum HOM05D005309 ORTHO05D006648 1.1e-95 354.4 320 60.0
SGA_v2.0_scaffold73G24489 Striga asiatica HOM05D005309 ORTHO05D006648 1.1e-95 354.4 322 58.4
PSO384G0241 Papaver somniferum HOM05D005309 ORTHO05D006648 2.4e-95 353.2 300 62.0
BcaB02g06781 Brassica carinata HOM05D005309 ORTHO05D006648 5.3e-95 352.1 294 61.2
Thhalv10007146m.g Eutrema salsugineum HOM05D005309 ORTHO05D006648 7.0e-95 351.7 296 60.5
BolC5t29253H Brassica oleracea HOM05D005309 ORTHO05D006648 9.1e-95 351.3 322 58.1
Ah.10g035950 Amaranthus hybridus HOM05D005309 ORTHO05D006648 1.2e-94 350.9 302 61.3
Medtr5g091110 Medicago truncatula HOM05D005309 ORTHO05D006648 1.2e-94 350.9 334 57.2
ECA234G1968 Erigeron canadensis HOM05D005309 ORTHO05D006648 1.6e-94 350.5 293 61.1
VMungo0647G1913 Vigna mungo HOM05D005309 ORTHO05D006648 1.6e-94 350.5 295 61.4
AUR62012368 Chenopodium quinoa HOM05D005309 ORTHO05D006648 2.0e-94 350.1 323 58.2
LjContig00049g0017299 Lotus japonicus HOM05D005309 ORTHO05D006648 2.0e-94 350.1 334 56.6
C05p04800 Brassica napus HOM05D005309 ORTHO05D006648 2.6e-94 349.7 295 61.7
Ca_06266_v3 Cicer arietinum L. HOM05D005309 ORTHO05D006648 3.5e-94 349.4 338 58.0
AL1G16590 Arabidopsis lyrata HOM05D005309 ORTHO05D006648 4.5e-94 349.0 333 57.4
CANSAT64G0469 Cannabis sativa HOM05D005309 ORTHO05D006648 4.5e-94 349.0 327 57.8
A08p35920 Brassica napus HOM05D005309 ORTHO05D006648 7.7e-94 348.2 337 58.2
Phvul.008G194100 Phaseolus vulgaris HOM05D005309 ORTHO05D006648 1.0e-93 347.8 332 57.5
BraA08t35499Z Brassica rapa HOM05D005309 ORTHO05D006648 1.3e-93 347.4 337 57.6
AT1G06560 Arabidopsis thaliana HOM05D005309 ORTHO05D006648 2.2e-93 346.7 290 60.7
EL10Ac2g04244 Beta vulgaris HOM05D005309 ORTHO05D006648 2.2e-93 346.7 302 60.6
A10p05200 Brassica napus HOM05D005309 ORTHO05D006648 2.2e-93 346.7 301 59.8
BraA10t42787Z Brassica rapa HOM05D005309 ORTHO05D006648 6.5e-93 345.1 305 58.4
RcHm_v2.0_Chr2g0152091 Rosa chinensis HOM05D005309 ORTHO05D006648 1.5e-92 344.0 301 59.1
BolC8t47061H Brassica oleracea HOM05D005309 ORTHO05D006648 2.5e-92 343.2 337 56.4
TPR.G10159 Trifolium pratense HOM05D005309 ORTHO05D006648 2.5e-92 343.2 320 58.8
Prupe.3G177300 Prunus persica HOM05D005309 ORTHO05D006648 2.7e-91 339.7 322 58.7
C08p02650 Brassica napus HOM05D005309 ORTHO05D006648 3.6e-91 339.3 336 56.0
Sc09g0008320 Simmondsia chinensis HOM05D005309 ORTHO05D006648 3.6e-91 339.3 289 61.9
Psat2g017040 Pisum sativum HOM05D005309 ORTHO05D006648 1.0e-90 337.8 343 53.4
Aa31LG1G7660 Aethionema arabicum HOM05D005309 ORTHO05D006648 1.4e-90 337.4 324 56.2
MD17G1135100 Malus domestica HOM05D005309 ORTHO05D006648 3.0e-90 336.3 322 58.4
FvH4_6g38630 Fragaria vesca HOM05D005309 ORTHO05D006648 1.2e-89 334.3 293 59.4
FAN14G4003 Fragaria x ananassa HOM05D005309 ORTHO05D006648 1.2e-89 334.3 293 59.4
FAN05G5670 Fragaria x ananassa HOM05D005309 ORTHO05D006648 1.5e-89 334.0 292 59.9
FAN02G0734 Fragaria x ananassa HOM05D005309 ORTHO05D006648 9.7e-89 331.3 298 57.0
HPP92_023436 Vanilla planifolia HOM05D005309 ORTHO05D006648 1.3e-88 330.9 304 59.2
SHI03273 Sapria himalayana HOM05D005309 ORTHO05D006648 4.8e-88 328.9 296 58.8
Lsat_1_v5_gn_4_26360 Lactuca sativa HOM05D005309 ORTHO05D006648 4.1e-87 325.9 294 59.2
AUR62031496 Chenopodium quinoa HOM05D000026 ORTHO05D007846 4.5e-86 322.4 298 57.4
FAN09G0570 Fragaria x ananassa HOM05D005309 ORTHO05D006648 4.5e-86 322.4 298 57.0
Zm00001eb170650 Zea mays HOM05D005309 ORTHO05D006648 3.6e-83 312.8 288 55.6
Os08g0365900 Oryza sativa ssp. japonica HOM05D005309 ORTHO05D006648 4.0e-82 309.3 288 56.9
COL.COLO4_08888 Corchorus olitorius HOM05D005309 ORTHO05D006648 2.8e-80 303.1 174 80.5
Haze_13536 Corylus avellana HOM05D005309 ORTHO05D006648 7.2e-76 288.5 262 59.5
Actinidia11207 Actinidia chinensis HOM05D005309 ORTHO05D006648 1.2e-73 281.2 298 54.0
ATR0585G094 Amborella trichopoda HOM05D005309 ORTHO05D006648 2.0e-65 253.8 159 75.5
MBI07_g26361_MAGBIO Magnolia biondii HOM05D005309 ORTHO05D006648 3.4e-65 253.1 250 56.8
CDE02G3568 Ceratophyllum demersum HOM05D005309 ORTHO05D006648 4.6e-62 242.7 267 51.7
Peaxi162Scf00359g00710 Petunia axillaris HOM05D005309 ORTHO05D006648 6.0e-62 242.3 319 47.3
vmacro08733 Vaccinium macrocarpon HOM05D005309 ORTHO05D006648 8.6e-61 238.4 352 44.3
unitig_899.g15343 Utricularia gibba HOM05D005309 ORTHO05D006648 1.1e-60 238.0 227 57.7
PSO339G1684 Papaver somniferum HOM05D005309 ORTHO05D006648 2.1e-59 233.8 230 54.8
Lsat_1_v5_gn_4_120101 Lactuca sativa HOM05D005309 ORTHO05D006648 7.5e-57 225.3 162 67.3
Pp3c12_23090 Physcomitrium patens HOM05D005309 ORTHO05D006648 1.2e-54 218.0 295 43.7
Mapoly0025s0011 Marchantia polymorpha HOM05D005309 ORTHO05D006648 7.3e-52 208.8 320 42.2
SMO293G0021 Selaginella moellendorffii HOM05D005309 ORTHO05D006648 1.6e-51 207.6 288 42.0
Lsat_1_v5_gn_4_60740 Lactuca sativa HOM05D005309 ORTHO05D006648 6.8e-50 202.2 235 49.4
Nitab4.5_0001552g0030 Nicotiana tabacum HOM05D005309 ORTHO05D006648 3.1e-42 176.8 116 76.7
Duzib138G1377 Durio zibethinus HOM05D005309 ORTHO05D006648 4.0e-42 176.4 125 73.6
SMO111G0017 Selaginella moellendorffii HOM05D005309 ORTHO05D006648 8.7e-37 158.7 291 35.1
CBR_g38934 Chara braunii HOM05D005309 ORTHO05D006648 1.9e-36 157.5 180 47.2
MD09G1148800 Malus domestica HOM05D005309 ORTHO05D006648 2.4e-34 150.6 95 75.8
Nitab4.5_0001552g0040 Nicotiana tabacum HOM05D005309 ORTHO05D006648 1.2e-33 148.3 179 47.5
AagrBONN_evm.TU.Sc2ySwM_362.1083 Anthoceros agrestis HOM05D005309 ORTHO05D006648 4.9e-32 142.9 118 58.5
Lsat_1_v5_gn_3_94440 Lactuca sativa HOM05D005309 ORTHO05D006648 6.0e-30 136.0 246 36.6
vmacro08734 Vaccinium macrocarpon HOM05D005309 ORTHO05D006648 4.0e-26 123.2 95 66.3
Cre13.g606200 Chlamydomonas reinhardtii HOM05D005309 ORTHO05D006648 1.4e-23 114.8 213 34.7
SEGI_40841 Sequoiadendron giganteum HOM05D005309 ORTHO05D006648 4.8e-19 99.8 70 61.4
Haze_13537 Corylus avellana HOM05D005309 ORTHO05D013293 2.6e-17 94.0 48 87.5
BcaNung07076 Brassica carinata HOM05D005309 ORTHO05D006648 4.5e-17 93.2 53 81.1
HanXRQChr09g0260261 Helianthus annuus HOM05D005309 ORTHO05D006648 9.9e-17 92.0 58 74.1
Lsat_1_v5_gn_4_133180 Lactuca sativa HOM05D005309 ORTHO05D012139 2.5e-12 77.4 118 39.8
Cre11.g476450 Chlamydomonas reinhardtii HOM05D005309 ORTHO05D006648 2.8e-11 73.9 224 26.3
MBI07_g45791_MAGBIO Magnolia biondii HOM05D005309 ORTHO05D006648 1.2e-09 68.6 42 76.2
MBI07_g26360_MAGBIO Magnolia biondii HOM05D005309 ORTHO05D006648 7.6e-09 65.9 80 50.0
ATR0585G013 Amborella trichopoda HOM05D005309 ORTHO05D006648 1.1e-07 62.0 67 47.8


User provided reference genes

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