Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.9e-270 935.3 462 100.0
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.0e-241 837.8 458 90.4
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 3.1e-225 785.0 458 83.0
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.5e-223 777.3 462 81.8
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.5e-223 777.3 462 81.8
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 6.7e-220 767.3 461 79.6
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 3.3e-219 765.0 460 80.0
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 4.3e-219 764.6 457 79.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 4.3e-219 764.6 490 77.8
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 4.8e-218 761.1 457 80.5
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 8.2e-218 760.4 461 79.2
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.1e-217 760.0 458 80.3
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 3.1e-217 758.4 463 79.0
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 3.1e-217 758.4 460 79.8
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 5.3e-217 757.7 461 79.2
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 6.5e-215 750.7 456 78.5
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 8.4e-215 750.4 461 78.3
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 4.2e-214 748.0 424 83.7
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.2e-214 748.0 462 78.4
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 5.5e-214 747.7 461 77.7
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 2.7e-213 745.3 457 79.2
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.6e-213 744.6 461 78.5
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.3e-212 743.0 455 77.6
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.0e-212 741.9 458 77.9
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 6.7e-212 740.7 469 77.4
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.1e-211 740.0 460 78.0
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 2.5e-211 738.8 455 78.7
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 2.5e-211 738.8 459 76.5
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 4.3e-211 738.0 461 77.2
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.2e-210 735.7 459 77.8
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 2.8e-210 735.3 458 78.2
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.1e-209 733.4 458 77.7
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.4e-209 733.0 458 77.9
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.4e-209 733.0 462 77.3
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 1.8e-209 732.6 452 78.3
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 3.1e-209 731.9 458 78.2
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 4.1e-209 731.5 478 75.1
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 9.0e-209 730.3 456 76.8
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.5e-208 729.6 490 73.7
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.0e-208 729.2 362 99.4
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 2.6e-208 728.8 459 76.3
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 3.4e-208 728.4 461 75.5
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 3.4e-208 728.4 459 76.3
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 4.5e-208 728.0 457 76.4
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.0e-207 726.9 465 75.3
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.7e-207 726.1 460 76.5
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 3.8e-207 724.9 457 76.6
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 6.5e-207 724.2 460 74.1
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 8.5e-207 723.8 452 77.2
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 8.5e-207 723.8 452 77.4
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 8.5e-207 723.8 443 78.8
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 8.5e-207 723.8 448 77.2
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 8.5e-207 723.8 455 75.8
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.1e-206 723.4 457 74.8
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.9e-206 722.6 461 75.7
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.5e-206 722.2 458 75.3
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 3.2e-206 721.8 454 76.9
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 9.4e-206 720.3 468 75.9
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 1.2e-205 719.9 461 74.2
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 2.1e-205 719.2 457 75.5
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.7e-205 718.8 455 77.1
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 3.6e-205 718.4 461 73.1
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 6.1e-205 717.6 481 73.8
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 7.9e-205 717.2 458 75.8
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.8e-204 716.1 456 76.1
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 2.3e-204 715.7 464 75.4
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.0e-204 715.3 456 74.3
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 6.7e-204 714.1 458 74.0
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.3e-203 711.8 463 75.2
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 1.8e-201 706.1 440 76.6
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 5.3e-201 704.5 457 74.6
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 6.9e-201 704.1 478 70.1
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 9.1e-201 703.7 604 61.4
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.2e-200 703.4 461 74.4
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 1.5e-200 703.0 457 74.0
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 2.0e-200 702.6 457 74.4
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 2.6e-200 702.2 453 74.6
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 5.9e-200 701.0 498 70.3
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 7.7e-200 700.7 498 68.9
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.7e-199 699.5 457 73.3
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.4e-198 696.4 457 73.5
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.5e-198 695.7 457 73.1
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 2.5e-198 695.7 429 77.2
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 2.1e-197 692.6 533 64.9
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 2.7e-197 692.2 457 73.3
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.4e-196 689.9 426 77.9
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 3.0e-196 688.7 457 73.1
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 8.8e-196 687.2 457 72.9
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 8.8e-196 687.2 470 72.3
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.3e-194 683.3 449 74.8
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 2.2e-194 682.6 458 72.7
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 7.7e-192 674.1 457 71.8
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 2.9e-191 672.2 455 72.3
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 9.4e-190 667.2 436 74.5
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 5.7e-187 657.9 455 70.3
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 8.5e-183 644.0 424 71.5
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 2.7e-181 639.0 382 80.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 8.8e-180 634.0 423 71.2
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 1.8e-172 609.8 456 64.3
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 5.2e-172 608.2 378 76.5
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 7.5e-171 604.4 358 81.0
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 6.3e-170 601.3 381 75.9
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.6e-168 596.7 398 75.6
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.1e-153 547.4 476 60.3
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 8.6e-151 537.7 459 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 2.8e-149 532.7 444 60.4
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 4.0e-148 528.9 454 58.4
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 6.8e-148 528.1 449 57.7
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 7.1e-145 518.1 281 86.1
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 3.4e-139 499.2 455 57.6
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 2.7e-136 489.6 471 54.8
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.6e-133 479.2 363 66.9
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 1.9e-129 466.8 451 55.2
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.3e-127 460.7 280 77.5
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 1.6e-120 437.2 282 72.7
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 3.0e-111 406.4 253 72.3
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 4.3e-102 375.9 253 73.1
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.7e-102 375.6 252 74.2
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.4e-100 370.9 499 43.7
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 1.2e-96 357.8 430 46.3
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.4e-92 344.4 537 40.2
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.6e-88 330.9 252 67.5
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.7e-88 330.1 246 68.3
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.0e-86 323.9 457 40.3
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 5.5e-73 279.3 162 77.2
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 9.4e-73 278.5 236 60.6
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.0e-67 260.8 180 72.2
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 2.2e-66 257.3 195 68.2
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.6e-62 243.8 187 65.2
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.6e-59 234.6 163 71.2
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 3.8e-58 229.9 236 54.2
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 3.2e-57 226.9 157 73.2
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.3e-55 220.7 343 42.6
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.8e-44 184.5 120 69.2
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 2.3e-42 177.6 105 85.7
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.6e-42 176.0 113 76.1
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 6.6e-42 176.0 115 73.9
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 1.3e-37 161.8 107 75.7
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.7e-37 161.4 108 74.1
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 8.3e-37 159.1 110 70.9
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.1e-31 142.1 91 75.8
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 8.9e-31 139.0 85 72.9
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.2e-29 134.4 91 63.7
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 5.8e-22 109.8 71 78.9
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 5.8e-22 109.8 71 78.9
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 5.8e-22 109.8 71 78.9
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.9e-20 104.8 105 53.3
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.6e-19 101.7 66 71.2
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 5.1e-18 96.7 68 67.6
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 6.6e-18 96.3 97 49.5
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 1.5e-14 85.1 44 88.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 9.9e-14 82.4 439 26.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.1e-10 70.1 37 91.9
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 5.1e-10 70.1 37 91.9
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 5.1e-10 70.1 55 60.0
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 6.6e-10 69.7 42 76.2
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.5e-09 68.6 147 36.7
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 4.3e-09 67.0 43 74.4
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 5.6e-09 66.6 67 55.2
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 7.3e-09 66.2 396 25.8
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 1.6e-08 65.1 41 70.7
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.4e-07 62.0 51 56.9
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.2e-06 58.9 214 28.0
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 4.5e-06 57.0 237 28.7
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 7.6e-06 56.2 244 26.6
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 7.6e-06 56.2 223 28.3
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 7.6e-06 56.2 223 28.3
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 7.6e-06 56.2 223 28.3
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 7.6e-06 56.2 31 93.5
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 7.6e-06 56.2 223 28.7


User provided reference genes

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