Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.4e-190 669.5 341 100.0
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.8e-175 618.6 341 91.2
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.6e-173 612.8 342 89.5
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.6e-173 612.8 342 89.5
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 4.4e-168 594.7 343 88.0
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.1e-166 590.1 342 86.8
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.4e-166 589.7 343 87.2
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 3.1e-166 588.6 341 87.4
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.0e-164 583.6 341 84.8
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 2.2e-164 582.4 343 86.0
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.5e-163 578.9 344 85.5
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 3.2e-163 578.6 347 83.3
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 9.4e-163 577.0 341 85.6
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 3.6e-162 575.1 342 85.4
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 1.4e-161 573.2 341 83.9
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 1.8e-161 572.8 343 84.3
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.0e-160 569.3 342 83.9
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 5.7e-160 567.8 341 83.3
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 5.7e-160 567.8 342 83.9
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 5.7e-160 567.8 351 82.3
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 9.8e-160 567.0 341 83.0
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 9.8e-160 567.0 342 83.0
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.3e-159 566.6 345 83.5
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 1.7e-159 566.2 344 83.1
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 2.8e-159 565.5 327 85.9
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 8.3e-159 563.9 345 81.4
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.4e-158 563.1 355 80.0
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.8e-158 562.8 343 84.0
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 2.4e-158 562.4 348 81.6
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 3.1e-158 562.0 342 82.5
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 3.1e-158 562.0 347 83.0
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 5.4e-158 561.2 348 81.3
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 9.2e-158 560.5 326 86.8
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.6e-157 559.7 342 82.5
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 2.7e-157 558.9 345 81.2
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 3.5e-157 558.5 345 80.6
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 7.7e-157 557.4 349 80.5
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.0e-156 557.0 345 81.2
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 1.3e-156 556.6 353 80.5
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 2.3e-156 555.8 343 81.6
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 2.3e-156 555.8 341 81.8
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.3e-156 555.8 342 81.6
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.8e-156 555.1 344 83.4
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 6.6e-156 554.3 346 81.5
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 8.6e-156 553.9 330 85.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.1e-155 553.5 345 80.9
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.9e-155 552.7 341 80.6
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.5e-155 552.4 347 80.4
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.5e-155 552.4 364 78.0
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.3e-155 552.0 345 81.4
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.3e-155 552.0 345 80.6
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 4.3e-155 551.6 341 81.8
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 4.3e-155 551.6 346 81.2
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 4.3e-155 551.6 344 80.2
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 5.6e-155 551.2 353 79.6
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 5.6e-155 551.2 348 79.3
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 9.5e-155 550.4 347 79.8
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 1.2e-154 550.1 348 79.0
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.2e-154 550.1 340 81.2
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.6e-154 549.7 346 80.9
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.6e-154 549.7 345 80.0
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 2.8e-154 548.9 350 80.6
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.8e-154 548.9 347 79.5
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.7e-154 548.1 348 80.7
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 6.1e-154 547.7 338 82.0
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 6.1e-154 547.7 353 78.8
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 8.0e-154 547.4 345 79.7
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.0e-153 547.0 339 80.5
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.8e-153 546.2 339 80.8
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 1.8e-153 546.2 348 78.7
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.0e-153 545.4 344 83.1
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 3.0e-153 545.4 350 80.3
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 3.0e-153 545.4 345 80.0
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 6.8e-153 544.3 338 80.5
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.4e-152 541.6 341 79.5
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.7e-151 539.7 369 75.1
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.9e-151 538.1 345 79.4
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 2.0e-149 532.7 359 76.9
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 3.9e-148 528.5 341 79.5
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 3.9e-148 528.5 343 79.0
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 8.6e-148 527.3 347 79.0
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 8.6e-148 527.3 343 78.7
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.9e-147 526.2 343 77.3
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 3.3e-147 525.4 343 79.3
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.2e-146 523.5 363 75.2
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 2.8e-146 522.3 344 77.0
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 3.6e-146 521.9 337 77.7
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 1.4e-145 520.0 346 76.3
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 2.3e-145 519.2 341 75.7
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 2.3e-145 519.2 341 75.7
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 2.3e-145 519.2 341 75.7
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 3.1e-145 518.8 351 75.2
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 3.1e-145 518.8 326 79.8
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 8.9e-145 517.3 341 76.5
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 2.0e-144 516.2 351 74.9
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 2.0e-144 516.2 354 74.0
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 3.4e-144 515.4 353 73.7
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 4.4e-144 515.0 341 75.4
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 4.4e-144 515.0 341 75.4
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 7.5e-144 514.2 349 74.5
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 3.7e-143 511.9 348 74.1
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 3.7e-143 511.9 348 74.1
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.9e-143 511.5 344 79.7
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 4.9e-143 511.5 355 73.5
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 4.9e-143 511.5 346 74.9
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 8.3e-143 510.8 348 74.1
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 4.1e-142 508.4 346 74.6
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 4.1e-142 508.4 349 74.5
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 1.2e-141 506.9 354 72.6
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 2.0e-141 506.1 362 72.1
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 3.5e-141 505.4 343 74.6
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 9.5e-139 497.3 341 73.0
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.8e-137 493.0 299 81.9
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.5e-136 490.0 336 75.9
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.3e-135 486.9 384 68.5
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 4.6e-133 478.4 345 69.9
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 7.8e-133 477.6 341 72.7
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 3.0e-132 475.7 329 70.5
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 8.6e-132 474.2 341 72.4
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.1e-131 473.8 344 70.9
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 5.6e-131 471.5 323 75.2
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 7.3e-131 471.1 344 69.8
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 9.5e-131 470.7 348 70.7
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.8e-130 469.2 271 86.0
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.8e-130 469.2 271 86.0
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 3.6e-130 468.8 346 67.9
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 2.3e-129 466.1 347 69.7
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 2.3e-129 466.1 347 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.0e-129 465.3 343 67.6
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 3.7e-127 458.8 348 65.5
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.1e-126 457.2 323 72.8
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.4e-126 456.1 315 70.2
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.1e-121 440.7 315 68.3
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 8.4e-119 431.0 271 78.2
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 6.0e-117 424.9 330 64.2
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.0e-113 412.1 322 63.0
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 5.3e-113 411.8 327 63.0
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 3.6e-106 389.0 231 82.3
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.8e-100 370.2 228 78.1
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 4.8e-98 362.1 255 71.0
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.1e-91 340.9 198 83.8
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.2e-86 321.6 298 56.0
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 2.7e-85 319.7 215 76.3
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 1.8e-81 307.0 248 64.9
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.2e-72 277.7 185 79.5
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.7e-69 266.5 186 68.3
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.7e-69 266.5 186 68.3
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.1e-61 240.4 165 69.7
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 5.3e-57 225.7 123 90.2
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 1.2e-56 224.6 119 89.9
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 3.5e-56 223.0 131 82.4
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.5e-54 217.6 122 82.0
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.7e-47 194.1 164 63.4
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.5e-46 190.3 164 62.8
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.2e-43 181.4 164 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.5e-40 169.5 127 63.8
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 1.3e-31 141.4 118 67.8
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.6e-29 133.3 173 47.4
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 3.4e-27 126.7 92 71.7
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.2e-26 124.0 92 69.6
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 2.9e-26 123.6 70 88.6
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 3.6e-21 106.7 78 67.9
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.4e-20 104.8 71 70.4
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.7e-18 96.7 118 46.6
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.0e-15 88.6 185 37.8
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 8.6e-15 85.5 78 56.4
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 2.6e-11 73.9 51 72.5
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 9.2e-09 65.5 42 81.0
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 3.0e-07 60.5 36 69.4
RhsimUnG0176100 Rhododendron simsii HOM05D000026 ORTHO05D000127 3.3e-06 57.0 53 58.5


User provided reference genes

Program Settings