Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.0e-111 404.4 205 100.0
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.0e-111 404.4 205 100.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-81 306.6 185 82.7
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 7.9e-80 300.8 180 86.1
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.1e-77 292.7 187 80.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.8e-77 292.4 178 82.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.1e-76 290.4 178 80.9
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.8e-76 289.7 178 80.9
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.1e-76 288.9 179 82.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.2e-75 287.0 179 81.6
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.5e-75 286.6 178 80.9
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 5.8e-75 284.6 181 80.1
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 6.4e-74 281.2 189 77.2
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 8.4e-74 280.8 177 78.0
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 8.4e-74 280.8 184 78.3
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.4e-73 280.0 177 80.8
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.2e-73 278.5 178 80.9
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.2e-73 278.5 184 77.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 7.1e-73 277.7 178 80.3
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 9.3e-73 277.3 184 77.2
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 9.3e-73 277.3 184 77.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 9.3e-73 277.3 178 79.2
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.6e-72 276.6 184 77.7
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 2.1e-72 276.2 180 78.9
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.7e-72 275.8 177 75.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.0e-72 274.6 180 77.2
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 7.9e-72 274.2 178 80.3
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.3e-71 273.5 179 81.6
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.8e-71 273.1 179 77.1
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.8e-71 273.1 180 76.1
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.1e-71 271.6 178 79.8
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 6.7e-71 271.2 179 78.8
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 8.7e-71 270.8 179 78.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 4.3e-70 268.5 185 76.2
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 9.6e-70 267.3 183 77.0
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-69 266.9 176 76.7
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.6e-69 266.5 172 80.2
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 2.1e-69 266.2 172 79.7
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.1e-69 266.2 178 76.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 3.7e-69 265.4 166 81.3
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.7e-69 265.4 172 79.1
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.7e-69 265.4 172 79.1
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.7e-69 265.4 178 79.2
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 4.8e-69 265.0 194 72.2
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.2e-69 264.6 178 75.3
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.2e-69 264.6 174 79.3
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 8.1e-69 264.2 173 76.9
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 8.1e-69 264.2 172 79.7
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-68 263.8 172 79.1
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.4e-68 263.5 178 74.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.4e-68 263.5 182 74.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.4e-68 262.7 178 75.3
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 3.1e-68 262.3 183 76.5
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 3.1e-68 262.3 181 76.8
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 4.0e-68 261.9 178 75.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.0e-68 261.9 179 76.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.0e-68 261.9 178 75.8
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 5.3e-68 261.5 188 74.5
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.9e-68 261.2 172 77.9
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.9e-68 261.2 172 79.1
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 6.9e-68 261.2 183 73.2
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.2e-67 260.4 179 76.5
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.5e-67 260.0 178 76.4
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.4e-67 258.8 180 76.7
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 4.5e-67 258.5 181 76.8
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 5.8e-67 258.1 178 75.8
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 5.8e-67 258.1 171 77.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 5.8e-67 258.1 192 69.8
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 4.9e-66 255.0 164 78.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.9e-66 255.0 173 74.6
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 6.5e-66 254.6 173 74.6
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 6.5e-66 254.6 178 75.8
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 8.4e-66 254.2 178 75.3
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 8.4e-66 254.2 178 75.3
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 8.4e-66 254.2 173 78.0
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.1e-65 253.8 176 75.0
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.4e-65 253.4 178 74.7
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.9e-65 253.1 178 74.7
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-65 253.1 178 74.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.9e-65 253.1 181 73.5
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 4.2e-65 251.9 174 75.3
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 7.1e-65 251.1 173 74.0
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 9.3e-65 250.8 179 73.7
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 9.3e-65 250.8 184 71.7
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.5e-64 248.8 173 74.6
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.5e-64 248.8 168 75.6
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.6e-64 248.4 173 75.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 6.0e-64 248.1 164 76.2
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.0e-63 247.3 182 72.5
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.0e-63 247.3 182 72.5
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.8e-63 246.5 172 71.5
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.8e-63 246.5 182 72.5
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.8e-63 246.5 181 74.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.3e-63 246.1 178 71.3
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.1e-62 243.8 187 68.4
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.5e-62 243.4 164 73.2
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.5e-62 243.4 164 73.2
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.9e-62 243.0 175 70.3
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.1e-61 239.6 175 70.3
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.8e-61 239.2 177 70.6
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.3e-61 238.0 178 67.4
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 6.3e-61 238.0 178 71.9
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 6.3e-61 238.0 174 69.5
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.1e-60 237.3 176 70.5
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.4e-60 236.9 179 68.2
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.8e-60 236.5 182 70.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.8e-60 236.5 179 68.2
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.1e-60 235.7 181 70.2
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.1e-60 235.3 179 70.9
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.1e-60 235.3 172 72.7
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.0e-59 233.0 151 73.5
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.6e-59 232.6 174 70.7
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 4.5e-59 231.9 174 71.3
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.3e-58 230.3 177 68.4
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-58 230.3 179 68.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.3e-58 230.3 174 69.5
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.2e-58 229.6 182 68.7
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.9e-58 229.2 177 69.5
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.1e-57 227.3 173 69.9
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.5e-57 226.1 179 68.2
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 3.2e-57 225.7 175 65.1
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 5.5e-57 224.9 178 67.4
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 7.9e-56 221.1 180 67.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.0e-55 220.7 157 77.1
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-55 219.9 153 73.9
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 5.1e-55 218.4 158 71.5
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.1e-54 217.2 239 52.3
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.9e-54 216.5 187 65.2
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 2.2e-53 213.0 165 66.1
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.1e-52 209.1 173 65.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.2e-49 199.1 121 80.2
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.7e-48 196.1 178 62.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.4e-47 193.7 178 56.7
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.4e-47 193.7 192 60.4
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 2.3e-47 193.0 196 60.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 6.7e-47 191.4 172 61.0
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 6.3e-45 184.9 143 60.8
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 2.0e-43 179.9 157 59.2
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.0e-42 177.6 176 55.1
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.9e-39 165.6 186 50.5
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.1e-36 155.6 97 77.3
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 5.3e-36 155.2 130 61.5
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-34 150.6 117 67.5
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.8e-34 149.1 173 50.3
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.5e-33 147.1 86 82.6
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-32 142.9 86 79.1
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.6e-30 136.3 120 61.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 2.6e-30 136.3 89 76.4
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.2e-29 133.3 130 61.5
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.8e-29 132.1 130 58.5
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.7e-24 115.5 85 67.1
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 3.0e-23 112.8 127 47.2
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.2e-22 110.9 131 43.5
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.4e-22 109.0 92 69.6
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.4e-22 109.0 92 69.6
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.4e-20 104.0 85 64.7
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.5e-19 99.4 105 43.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.6e-16 90.5 139 36.7
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.4e-14 82.8 46 82.6
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.8e-12 77.0 65 61.5
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.1e-12 75.9 80 51.2
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 7.8e-11 71.6 89 40.4
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 8.6e-10 68.2 193 32.6
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 8.6e-10 68.2 87 48.3
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.5e-09 66.6 79 50.6
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 7.5e-06 55.1 110 40.9


User provided reference genes

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