Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.1e-167 593.2 289 100.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 2.4e-106 389.4 287 66.6
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 5.3e-98 361.7 295 60.7
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 2.6e-97 359.4 295 60.0
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.3e-96 357.1 295 59.7
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 6.5e-88 328.2 256 60.5
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 6.5e-88 328.2 289 58.8
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 4.2e-87 325.5 289 57.8
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 3.6e-86 322.4 292 58.2
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 6.7e-85 318.2 289 55.7
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 2.5e-84 316.2 290 56.9
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 5.7e-84 315.1 294 57.1
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 5.5e-79 298.5 292 55.1
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.6e-78 297.0 294 54.4
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 2.3e-77 293.1 294 53.4
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 3.9e-77 292.4 295 54.2
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 6.7e-77 291.6 295 54.2
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 8.8e-77 291.2 288 51.0
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 1.1e-76 290.8 293 54.6
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 2.6e-76 289.7 287 54.7
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 3.3e-76 289.3 292 52.7
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 5.7e-76 288.5 290 53.8
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 1.3e-75 287.3 289 51.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 4.8e-75 285.4 306 52.6
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 4.8e-75 285.4 287 53.3
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 1.1e-74 284.3 296 53.7
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 1.4e-74 283.9 291 53.6
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 9.1e-74 281.2 294 51.0
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 1.2e-73 280.8 288 53.8
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 1.5e-73 280.4 292 51.0
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 1.0e-72 277.7 291 50.5
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 1.3e-72 277.3 291 50.5
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 2.2e-72 276.6 292 50.3
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 3.8e-72 275.8 292 49.7
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 3.8e-72 275.8 292 54.1
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 5.0e-72 275.4 287 48.4
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 8.5e-72 274.6 289 49.1
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 1.9e-71 273.5 290 49.0
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 1.4e-69 267.3 292 50.0
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.8e-69 266.9 293 51.5
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.9e-69 265.8 294 46.6
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 3.9e-69 265.8 290 47.9
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 5.2e-69 265.4 290 49.3
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 5.2e-69 265.4 293 50.9
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 6.7e-69 265.0 293 51.2
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 8.8e-69 264.6 289 48.1
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.1e-68 264.2 298 49.3
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 2.6e-68 263.1 293 50.9
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 4.4e-68 262.3 289 47.8
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 1.3e-67 260.8 292 48.6
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 2.2e-67 260.0 282 48.2
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 2.2e-67 260.0 293 46.4
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 2.8e-67 259.6 294 50.7
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 3.7e-67 259.2 290 49.3
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 3.7e-67 259.2 291 49.5
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 8.2e-67 258.1 290 47.9
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 1.1e-66 257.7 296 48.6
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 1.4e-66 257.3 288 46.5
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 1.4e-66 257.3 292 48.6
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 1.8e-66 256.9 292 49.0
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 2.4e-66 256.5 292 47.9
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 4.1e-66 255.8 288 48.3
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 7.0e-66 255.0 292 50.0
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 9.1e-66 254.6 284 46.1
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 1.2e-65 254.2 291 49.1
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 1.2e-65 254.2 291 47.4
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 1.6e-65 253.8 305 48.5
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 2.2e-64 250.0 293 46.1
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 2.2e-64 250.0 293 46.1
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 2.2e-64 250.0 297 49.5
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 3.8e-64 249.2 348 40.8
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 3.2e-63 246.1 288 45.5
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 9.4e-63 244.6 290 44.5
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 1.6e-62 243.8 292 47.9
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 3.6e-62 242.7 353 40.8
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 4.7e-62 242.3 292 44.9
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 8.0e-62 241.5 289 46.7
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 1.0e-61 241.1 293 45.4
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 1.8e-61 240.4 289 45.7
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 2.0e-60 236.9 293 45.1
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 2.6e-60 236.5 291 43.6
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 2.6e-60 236.5 292 44.5
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 4.4e-60 235.7 292 44.2
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 3.7e-59 232.6 294 44.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 5.3e-58 228.8 265 43.8
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 9.1e-58 228.0 295 44.7
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.6e-57 227.3 295 44.7
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 2.2e-56 223.4 294 44.2
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 2.2e-56 223.4 294 44.2
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 2.9e-56 223.0 292 43.2
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.2e-54 217.6 213 50.2
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 1.2e-54 217.6 292 43.5
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 2.1e-54 216.9 293 43.0
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 3.6e-54 216.1 298 41.9
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 9.8e-52 208.0 291 42.3
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 1.7e-51 207.2 287 41.5
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 3.7e-51 206.1 291 39.9
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 4.1e-50 202.6 291 42.6
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 1.7e-48 197.2 253 43.5
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 5.0e-48 195.7 287 38.3
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 1.5e-47 194.1 293 39.9
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 4.7e-46 189.1 291 38.8
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 3.2e-42 176.4 147 59.2
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.1e-39 167.9 152 56.6
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.2e-37 159.1 342 35.1
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.9e-32 142.9 175 46.3
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 6.0e-25 119.0 291 32.0
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 6.6e-24 115.5 107 51.4
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 2.1e-22 110.5 108 57.4
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 6.2e-22 109.0 110 48.2
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 9.9e-20 101.7 234 32.9
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 8.3e-19 98.6 108 51.9
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.4e-18 97.8 80 55.0
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 2.4e-18 97.1 257 28.8
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 5.4e-18 95.9 311 28.0
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 1.0e-16 91.7 70 65.7
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.2e-12 78.2 93 51.6
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.1e-07 61.6 71 45.1


User provided reference genes

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