Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 4.2e-101 371.3 182 100.0
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 2.1e-92 342.4 181 92.3
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.7e-89 332.8 183 86.9
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 2.8e-89 332.0 181 86.7
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 2.4e-88 328.9 184 87.5
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 4.1e-88 328.2 183 85.2
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 4.1e-88 328.2 182 84.1
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 7.0e-88 327.4 188 84.0
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 1.2e-87 326.6 174 89.7
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 2.0e-87 325.9 182 86.8
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.6e-87 325.5 181 86.2
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.6e-87 325.5 181 86.2
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.5e-87 325.1 186 84.9
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 3.5e-87 325.1 183 84.7
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 5.9e-87 324.3 183 84.7
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.3e-86 323.2 185 84.3
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 2.9e-86 322.0 182 84.1
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 2.9e-86 322.0 184 82.1
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 2.9e-86 322.0 183 84.2
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 2.9e-86 322.0 188 80.9
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 2.9e-86 322.0 184 85.3
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 6.5e-86 320.9 179 85.5
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 1.5e-85 319.7 184 82.1
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 1.9e-85 319.3 182 84.1
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 1.9e-85 319.3 185 82.7
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 1.9e-85 319.3 185 83.8
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 2.5e-85 318.9 185 84.3
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 3.2e-85 318.5 188 81.9
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 4.2e-85 318.2 191 81.7
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 4.2e-85 318.2 191 81.7
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 4.2e-85 318.2 182 84.1
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 5.5e-85 317.8 185 83.2
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 7.2e-85 317.4 192 81.8
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.2e-84 316.6 187 81.8
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.1e-84 315.8 187 81.3
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 2.7e-84 315.5 189 80.4
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 2.7e-84 315.5 191 80.1
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 2.7e-84 315.5 187 81.3
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 2.7e-84 315.5 181 85.1
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 4.7e-84 314.7 182 82.4
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 6.1e-84 314.3 186 80.6
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 8.0e-84 313.9 191 79.6
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.0e-83 313.5 187 80.7
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 1.4e-83 313.2 191 79.1
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 1.8e-83 312.8 191 81.7
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 2.3e-83 312.4 189 77.8
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 2.3e-83 312.4 189 77.8
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 2.3e-83 312.4 187 78.6
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 2.3e-83 312.4 190 80.5
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.0e-83 312.0 192 79.7
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 3.0e-83 312.0 192 80.2
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 4.0e-83 311.6 186 79.0
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 4.0e-83 311.6 191 81.2
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 4.0e-83 311.6 187 81.8
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 5.2e-83 311.2 189 77.8
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 5.2e-83 311.2 191 78.5
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 5.2e-83 311.2 189 77.2
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 8.8e-83 310.5 190 79.5
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 8.8e-83 310.5 190 79.5
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 1.1e-82 310.1 193 78.2
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 2.0e-82 309.3 179 79.9
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.6e-82 308.9 192 79.2
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 2.6e-82 308.9 189 79.4
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 4.4e-82 308.1 190 76.3
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.7e-82 307.8 200 76.5
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 7.5e-82 307.4 187 77.0
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 7.5e-82 307.4 192 77.1
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 9.7e-82 307.0 186 77.4
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 9.7e-82 307.0 186 77.4
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 9.7e-82 307.0 186 77.4
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 9.7e-82 307.0 182 79.7
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 1.3e-81 306.6 189 76.2
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 1.3e-81 306.6 192 78.1
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 1.7e-81 306.2 188 76.6
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 1.7e-81 306.2 186 80.6
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 2.8e-81 305.4 185 82.7
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 4.8e-81 304.7 189 74.1
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 8.2e-81 303.9 183 82.0
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 1.1e-80 303.5 191 74.3
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.1e-80 303.5 180 81.1
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.4e-80 302.4 185 79.5
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 4.1e-80 301.6 189 75.7
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 5.3e-80 301.2 168 84.5
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 1.6e-79 299.7 182 80.2
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 2.0e-79 299.3 187 78.1
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.7e-79 298.9 183 79.2
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 4.5e-79 298.1 190 77.4
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 5.9e-79 297.7 187 77.0
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 3.8e-78 295.0 210 71.4
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 4.2e-77 291.6 235 65.5
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 2.7e-76 288.9 170 82.9
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 3.6e-76 288.5 184 75.0
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.1e-76 287.7 139 100.0
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 8.0e-76 287.3 217 66.8
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 1.0e-75 287.0 183 73.8
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.0e-74 282.7 172 79.7
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 2.6e-74 282.3 183 72.7
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 2.2e-73 279.3 183 71.6
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 4.8e-73 278.1 183 73.2
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 1.1e-72 276.9 181 76.2
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 5.9e-71 271.2 248 57.7
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.2e-68 263.5 179 72.6
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 2.8e-65 252.3 188 68.1
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 1.8e-64 249.6 189 67.7
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 2.0e-58 229.6 121 90.9
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 3.5e-55 218.8 144 74.3
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 3.2e-48 195.7 181 55.2
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.0e-46 190.7 140 70.7
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.1e-45 187.2 191 50.3
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 3.3e-45 185.7 134 68.7
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 1.2e-44 183.7 183 51.9
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.5e-37 160.2 174 47.7
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 2.1e-36 156.4 122 58.2
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.2e-32 142.5 101 72.3
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 2.1e-31 139.8 101 71.3
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 1.7e-30 136.7 181 44.8
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 6.6e-30 134.8 70 87.1
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.2e-23 114.0 60 83.3
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.0e-22 110.9 80 75.0
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 3.0e-22 109.4 58 89.7
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 1.8e-19 100.1 56 83.9
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 1.3e-17 94.0 180 36.7
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 1.1e-16 90.9 75 61.3
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 1.6e-15 87.0 61 70.5
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 1.3e-14 84.0 50 82.0
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 3.0e-14 82.8 61 68.9
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 4.3e-13 79.0 38 100.0
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 1.5e-10 70.5 61 62.3
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 1.3e-09 67.4 37 81.1
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 2.3e-06 56.6 35 71.4


User provided reference genes

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