Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0061F.1_g033870 Hydrangea macrophylla HOM05D000660 ORTHO05D035069 1.3e-30 135.6 63 100.0
Cc03_g01050 Coffea canephora HOM05D000660 ORTHO05D003823 6.9e-11 70.1 41 70.7
Rhsim02G0005500 Rhododendron simsii HOM05D000660 ORTHO05D003823 6.9e-11 70.1 40 77.5
CSS0001347 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 9.1e-11 69.7 40 75.0
CSS0036186 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 9.1e-11 69.7 40 75.0
Dinv15197 Davidia involucrata HOM05D000660 ORTHO05D003823 1.2e-10 69.3 40 75.0
vmacro15192 Vaccinium macrocarpon HOM05D000660 ORTHO05D003823 1.2e-10 69.3 40 75.0
Lj6C688T9 Lonicera japonica HOM05D000660 ORTHO05D003823 2.0e-10 68.6 40 75.0
Actinidia13368 Actinidia chinensis HOM05D000660 ORTHO05D003823 2.6e-10 68.2 40 72.5
Dinv44310 Davidia involucrata HOM05D063241 ORTHO05D035069 2.6e-10 68.2 40 75.0
Prupe.1G122800 Prunus persica HOM05D000660 ORTHO05D003823 2.6e-10 68.2 40 72.5
RcHm_v2.0_Chr4g0424431 Rosa chinensis HOM05D000660 ORTHO05D003823 2.6e-10 68.2 41 70.7
DCAR_027015 Daucus carota HOM05D000660 ORTHO05D003823 3.4e-10 67.8 41 68.3
Oeu006447.1 Olea europaea HOM05D000660 ORTHO05D003823 3.4e-10 67.8 40 72.5
CiPaw.02G076200 Carya illinoinensis HOM05D000660 ORTHO05D003823 4.5e-10 67.4 41 68.3
FvH4_4g19400 Fragaria vesca HOM05D000660 ORTHO05D003823 4.5e-10 67.4 41 68.3
FAN07G0370 Fragaria x ananassa HOM05D000660 ORTHO05D003823 4.5e-10 67.4 41 68.3
FAN12G0613 Fragaria x ananassa HOM05D000660 ORTHO05D003823 4.5e-10 67.4 41 68.3
FAN12G4342 Fragaria x ananassa HOM05D000660 ORTHO05D003823 4.5e-10 67.4 41 68.3
FvH4_5g29370 Fragaria vesca HOM05D000660 ORTHO05D000498 5.9e-10 67.0 41 68.3
Ciclev10004273m.g Citrus clementina HOM05D000660 ORTHO05D003823 7.7e-10 66.6 40 72.5
Glyma.07G242000 Glycine max HOM05D000660 ORTHO05D003823 7.7e-10 66.6 40 67.5
Glyma.17G031900 Glycine max HOM05D000660 ORTHO05D003823 7.7e-10 66.6 40 67.5
Lj4g0003383 Lotus japonicus HOM05D000660 ORTHO05D003823 7.7e-10 66.6 40 67.5
Oeu016483.1 Olea europaea HOM05D000660 ORTHO05D003823 7.7e-10 66.6 40 72.5
Glyma.09G038300 Glycine max HOM05D000660 ORTHO05D003823 1.0e-09 66.2 40 70.0
PGR031G0095 Punica granatum HOM05D000660 ORTHO05D003823 1.0e-09 66.2 40 75.0
TWI09G1385 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 1.0e-09 66.2 40 72.5
arahy.Tifrunner.gnm1.ann1.AHLX63 Arachis hypogaea HOM05D000660 ORTHO05D003823 1.3e-09 65.9 40 70.0
arahy.Tifrunner.gnm1.ann1.UNJ3ZI Arachis hypogaea HOM05D000660 ORTHO05D003823 1.3e-09 65.9 40 70.0
ECA248G0336 Erigeron canadensis HOM05D000660 ORTHO05D003823 1.3e-09 65.9 41 68.3
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 1.3e-09 65.9 40 70.0
MSTRG.10139 Avicennia marina HOM05D000660 ORTHO05D003823 1.7e-09 65.5 40 65.0
Actinidia40357 Actinidia chinensis HOM05D000660 ORTHO05D003823 2.2e-09 65.1 40 67.5
Ca_01875_v3 Cicer arietinum L. HOM05D000660 ORTHO05D003823 2.2e-09 65.1 40 65.0
Gohir.D02G058200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 2.2e-09 65.1 40 67.5
Lsat_1_v5_gn_1_43941 Lactuca sativa HOM05D000660 ORTHO05D003823 2.2e-09 65.1 40 67.5
Psat1g160720 Pisum sativum HOM05D000660 ORTHO05D003823 2.2e-09 65.1 40 65.0
vmacro08067 Vaccinium macrocarpon HOM05D000660 ORTHO05D003823 2.2e-09 65.1 40 70.0
CSS0035880 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 67.5
CAN.G197.10 Capsicum annuum HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 72.5
CiPaw.01G141000 Carya illinoinensis HOM05D000660 ORTHO05D003823 2.9e-09 64.7 41 65.9
Glyma.15G143400 Glycine max HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 67.5
Nitab4.5_0001305g0010 Nicotiana tabacum HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 72.5
Nitab4.5_0003294g0010 Nicotiana tabacum HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 72.5
Solyc12g099340.3 Solanum lycopersicum HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 70.0
Sopen12g034010 Solanum pennellii HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 70.0
TAR633G0684 Trochodendron aralioides HOM05D000660 ORTHO05D003823 2.9e-09 64.7 40 70.0
CsaV3_6G022470 Cucumis sativus L. HOM05D000660 ORTHO05D003823 3.8e-09 64.3 40 70.0
Gohir.A02G053500 Gossypium hirsutum HOM05D000660 ORTHO05D003823 3.8e-09 64.3 40 65.0
Gorai.005G065700 Gossypium raimondii HOM05D000660 ORTHO05D003823 3.8e-09 64.3 40 65.0
PGR004G1371 Punica granatum HOM05D000660 ORTHO05D003823 3.8e-09 64.3 41 63.4
AUR62016135 Chenopodium quinoa HOM05D000660 ORTHO05D003823 5.0e-09 63.9 40 70.0
AUR62041410 Chenopodium quinoa HOM05D000660 ORTHO05D003823 5.0e-09 63.9 40 70.0
Gohir.A10G170700 Gossypium hirsutum HOM05D000660 ORTHO05D003823 5.0e-09 63.9 40 67.5
Gohir.D10G177800 Gossypium hirsutum HOM05D000660 ORTHO05D003823 5.0e-09 63.9 40 67.5
Gorai.011G198600 Gossypium raimondii HOM05D000660 ORTHO05D003823 5.0e-09 63.9 40 67.5
Hund11955 Selenicereus undatus HOM05D000660 ORTHO05D003823 5.0e-09 63.9 40 67.5
DCAR_030479 Daucus carota HOM05D000660 ORTHO05D003823 6.5e-09 63.5 40 65.0
MD16G1157900 Malus domestica HOM05D000660 ORTHO05D003823 6.5e-09 63.5 40 67.5
Solyc01g060170.4 Solanum lycopersicum HOM05D000660 ORTHO05D003823 6.5e-09 63.5 40 70.0
Sopen01g026290 Solanum pennellii HOM05D000660 ORTHO05D003823 6.5e-09 63.5 40 70.0
Cfa015345 Carpinus fangiana HOM05D000660 ORTHO05D003823 8.5e-09 63.2 40 70.0
ClCG06G004700 Citrullus lanatus HOM05D000660 ORTHO05D003823 8.5e-09 63.2 40 67.5
MELO3C021280.2 Cucumis melo HOM05D000660 ORTHO05D003823 8.5e-09 63.2 40 70.0
HanXRQChr01g0029901 Helianthus annuus HOM05D000660 ORTHO05D003823 1.1e-08 62.8 40 65.0
Medtr2g034650 Medicago truncatula HOM05D000660 ORTHO05D003823 1.1e-08 62.8 40 62.5
Phvul.003G111900 Phaseolus vulgaris HOM05D000660 ORTHO05D003823 1.1e-08 62.8 40 65.0
Sc13g0006390 Simmondsia chinensis HOM05D000660 ORTHO05D003823 1.1e-08 62.8 41 58.5
Ah.13g072050 Amaranthus hybridus HOM05D000660 ORTHO05D003823 1.4e-08 62.4 58 53.4
arahy.Tifrunner.gnm1.ann1.GX0UVA Arachis hypogaea HOM05D000660 ORTHO05D003823 1.4e-08 62.4 42 61.9
Lalb_Chr12g0200951 Lupinus albus HOM05D000660 ORTHO05D003823 1.4e-08 62.4 39 66.7
Manes.03G202200 Manihot esculenta HOM05D000660 ORTHO05D003823 1.4e-08 62.4 40 67.5
MSTRG.21779 Avicennia marina HOM05D000660 ORTHO05D003823 1.9e-08 62.0 40 62.5
Rhsim04G0233600 Rhododendron simsii HOM05D000660 ORTHO05D003823 1.9e-08 62.0 40 65.0
Sabra10G0109600 Salix brachista HOM05D000660 ORTHO05D003823 1.9e-08 62.0 40 62.5
TWI73G0500 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 1.9e-08 62.0 40 67.5
GSVIVG01035027001 Vitis vinifera HOM05D000660 ORTHO05D003823 1.9e-08 62.0 41 61.0
COL.COLO4_34655 Corchorus olitorius HOM05D000660 ORTHO05D003823 2.5e-08 61.6 40 62.5
Duzib212G0471 Durio zibethinus HOM05D000660 ORTHO05D003823 2.5e-08 61.6 40 62.5
Phvul.009G254500 Phaseolus vulgaris HOM05D000660 ORTHO05D003823 2.5e-08 61.6 40 62.5
PSO541G0234 Papaver somniferum HOM05D000660 ORTHO05D003823 3.2e-08 61.2 40 62.5
Peaxi162Scf00065g00120 Petunia axillaris HOM05D000660 ORTHO05D003823 3.2e-08 61.2 40 70.0
Hund03106 Selenicereus undatus HOM05D000660 ORTHO05D003823 3.2e-08 61.2 54 53.7
Cpa.g.sc929.1 Carica papaya HOM05D000660 ORTHO05D003823 4.2e-08 60.8 40 60.0
Gohir.A09G065200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 4.2e-08 60.8 40 65.0
Lalb_Chr13g0298391 Lupinus albus HOM05D000660 ORTHO05D003823 4.2e-08 60.8 40 65.0
AL3G29920 Arabidopsis lyrata HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 62.5
arahy.Tifrunner.gnm1.ann1.70REMX Arachis hypogaea HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 65.0
Gohir.D09G064200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 65.0
Gorai.006G079000 Gossypium raimondii HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 65.0
Nn4g25624 Nelumbo nucifera HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 65.0
QL06p011538 Quercus lobata HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 67.5
Sabra08G0081600 Salix brachista HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 60.0
Hund03104 Selenicereus undatus HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 65.0
SGA_v2.0_scaffold264G46038 Striga asiatica HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 60.0
Thecc.04G296700 Theobroma cacao HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 62.5
TPR.G16847 Trifolium pratense HOM05D000660 ORTHO05D003823 5.5e-08 60.5 40 60.0
AT3G16940 Arabidopsis thaliana HOM05D000660 ORTHO05D003823 7.2e-08 60.1 40 62.5
CARHR092210 Cardamine hirsuta HOM05D000660 ORTHO05D003823 7.2e-08 60.1 40 60.0
Lalb_Chr18g0058851 Lupinus albus HOM05D000660 ORTHO05D003823 7.2e-08 60.1 40 65.0
Potri.008G107900 Populus trichocarpa HOM05D000660 ORTHO05D003823 7.2e-08 60.1 40 60.0
Sp3g15170 Schrenkiella parvula HOM05D000660 ORTHO05D003823 7.2e-08 60.1 40 60.0
Eucgr.H04035 Eucalyptus grandis HOM05D000660 ORTHO05D003823 9.4e-08 59.7 40 62.5
Lj6g0007586 Lotus japonicus HOM05D000660 ORTHO05D003823 9.4e-08 59.7 40 62.5
Medtr4g121840 Medicago truncatula HOM05D000660 ORTHO05D003823 9.4e-08 59.7 40 57.5
Psat4g022600 Pisum sativum HOM05D000660 ORTHO05D003823 9.4e-08 59.7 40 60.0
Potri.010G141700 Populus trichocarpa HOM05D000660 ORTHO05D003823 9.4e-08 59.7 40 60.0
Sed0012995 Sechium edule HOM05D000660 ORTHO05D003823 9.4e-08 59.7 40 65.0
Carub.0003s1669 Capsella rubella HOM05D000660 ORTHO05D003823 1.2e-07 59.3 40 62.5
Ca_21455_v3 Cicer arietinum L. HOM05D000660 ORTHO05D003823 1.2e-07 59.3 40 57.5
Migut.N00052 Erythranthe guttata HOM05D000660 ORTHO05D003823 1.2e-07 59.3 40 62.5
PSO675G1345 Papaver somniferum HOM05D000660 ORTHO05D003823 1.2e-07 59.3 40 60.0
SalBow8G3172 Salvia bowleyana HOM05D000660 ORTHO05D003823 1.2e-07 59.3 40 60.0
SalBow8G5344 Salvia bowleyana HOM05D000660 ORTHO05D003823 1.2e-07 59.3 40 60.0
BcaB06g25786 Brassica carinata HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 57.5
BcaC05g28839 Brassica carinata HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 57.5
A05p32730 Brassica napus HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 57.5
C05p49450 Brassica napus HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 57.5
BolC5t33692H Brassica oleracea HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 57.5
BraA05t22095Z Brassica rapa HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 57.5
Haze_01065 Corylus avellana HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 60.0
DCAR_023337 Daucus carota HOM05D000660 ORTHO05D003823 1.6e-07 58.9 35 68.6
THA.LOC104802602 Tarenaya hassleriana HOM05D000660 ORTHO05D003823 1.6e-07 58.9 40 57.5
Thhalv10024342m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 2.1e-07 58.5 40 60.0
Nn3g21665 Nelumbo nucifera HOM05D000660 ORTHO05D003823 2.1e-07 58.5 40 55.0
Aa31LG8G4000 Aethionema arabicum HOM05D000660 ORTHO05D003823 2.7e-07 58.2 40 62.5
EL10Ac3g05455 Beta vulgaris HOM05D000660 ORTHO05D003823 3.6e-07 57.8 40 57.5
Thhalv10020047m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 3.6e-07 57.8 40 57.5
TPR.G5767 Trifolium pratense HOM05D000660 ORTHO05D003823 3.6e-07 57.8 40 57.5
unitig_88.g27707 Utricularia gibba HOM05D000660 ORTHO05D003823 3.6e-07 57.8 40 57.5
Atru.chr4.2977 Acer truncatum HOM05D000660 ORTHO05D003823 4.6e-07 57.4 40 62.5
BcaB04g18367 Brassica carinata HOM05D000660 ORTHO05D003823 6.1e-07 57.0 40 57.5
BolC8t48338H Brassica oleracea HOM05D000660 ORTHO05D003823 6.1e-07 57.0 40 57.5
Lsat_1_v5_gn_6_114260 Lactuca sativa HOM05D000660 ORTHO05D003823 6.1e-07 57.0 40 60.0
CANSAT78G1612 Cannabis sativa HOM05D000660 ORTHO05D003823 7.9e-07 56.6 40 57.5
CARHR222510 Cardamine hirsuta HOM05D000660 ORTHO05D003823 7.9e-07 56.6 40 57.5
Cfa015489 Carpinus fangiana HOM05D000660 ORTHO05D003823 7.9e-07 56.6 40 57.5
Migut.G00093 Erythranthe guttata HOM05D000660 ORTHO05D003823 7.9e-07 56.6 40 52.5
VMungo1215G0416 Vigna mungo HOM05D000660 ORTHO05D003823 7.9e-07 56.6 40 60.0
HanXRQChr05g0148191 Helianthus annuus HOM05D000660 ORTHO05D003823 1.0e-06 56.2 40 60.0
MBI19_g24816_MAGBIO Magnolia biondii HOM05D000660 ORTHO05D003823 1.0e-06 56.2 41 56.1
Sp7g14650 Schrenkiella parvula HOM05D000660 ORTHO05D003823 1.0e-06 56.2 40 57.5
SGA_v2.0_scaffold67G22570 Striga asiatica HOM05D000660 ORTHO05D003823 1.0e-06 56.2 40 55.0
Aa31LG10G5980 Aethionema arabicum HOM05D000660 ORTHO05D003823 1.4e-06 55.8 40 55.0
Aqoxy2G02782 Aquilegia oxysepala HOM05D000660 ORTHO05D003823 1.4e-06 55.8 40 57.5
BcaC07g37956 Brassica carinata HOM05D000660 ORTHO05D003823 1.8e-06 55.5 40 55.0
Carub.0007s2541 Capsella rubella HOM05D000660 ORTHO05D003823 1.8e-06 55.5 40 55.0
TAR362G1226 Trochodendron aralioides HOM05D000660 ORTHO05D003823 1.8e-06 55.5 40 60.0
A08p12400 Brassica napus HOM05D000660 ORTHO05D003823 2.3e-06 55.1 40 55.0
BraA08t33216Z Brassica rapa HOM05D000660 ORTHO05D003823 2.3e-06 55.1 40 55.0
ECA246G5148 Erigeron canadensis HOM05D000660 ORTHO05D003823 3.9e-06 54.3 40 55.0
TWI53G0835 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 5.1e-06 53.9 34 64.7


User provided reference genes

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