Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 9.8e-135 483.4 235 100.0
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 9.3e-93 344.0 236 71.6
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 6.2e-89 331.3 224 71.4
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 1.5e-87 326.6 236 67.8
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 3.4e-87 325.5 236 67.4
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 7.6e-87 324.3 225 68.4
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.7e-86 323.2 232 65.9
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 2.2e-86 322.8 232 66.8
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 3.8e-86 322.0 224 70.1
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 4.9e-86 321.6 233 67.8
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.1e-85 320.5 229 69.0
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 1.1e-85 320.5 236 68.2
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 3.2e-85 318.9 232 65.5
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 9.3e-85 317.4 240 63.8
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 7.9e-84 314.3 226 67.3
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.0e-83 312.4 225 68.9
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 1.9e-82 309.7 229 65.5
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 5.6e-82 308.1 228 66.2
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 1.6e-81 306.6 236 64.0
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 2.8e-81 305.8 227 63.9
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 2.8e-81 305.8 231 68.0
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 4.8e-81 305.1 238 63.0
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.1e-80 303.9 236 61.9
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.1e-80 303.9 234 62.4
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.8e-80 303.1 243 61.3
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 3.1e-80 302.4 238 61.8
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.2e-79 300.4 227 65.2
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 2.6e-79 299.3 212 67.5
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 3.4e-79 298.9 235 61.3
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 4.5e-79 298.5 236 63.6
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 4.5e-79 298.5 215 67.9
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 4.5e-79 298.5 215 67.9
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 4.5e-79 298.5 237 62.4
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 2.9e-78 295.8 232 60.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 3.8e-78 295.4 215 67.4
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 3.8e-78 295.4 228 62.7
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.8e-78 295.4 225 64.4
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 8.4e-78 294.3 232 60.8
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 1.9e-77 293.1 239 61.1
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 2.5e-77 292.7 224 62.9
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.5e-77 292.7 245 60.4
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 3.2e-77 292.4 223 61.9
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 3.2e-77 292.4 245 62.4
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 4.2e-77 292.0 241 59.8
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 7.1e-77 291.2 235 59.1
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 3.5e-76 288.9 219 63.5
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 6.0e-76 288.1 236 62.7
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 7.9e-76 287.7 236 61.0
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 5.7e-74 281.6 208 64.9
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 7.4e-74 281.2 226 61.5
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 1.3e-73 280.4 225 61.3
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 2.1e-73 279.6 221 61.5
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.1e-72 277.3 227 61.7
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.4e-72 276.9 253 59.3
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 3.1e-72 275.8 235 58.3
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 4.1e-72 275.4 203 61.6
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 1.2e-71 273.9 231 59.3
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 1.5e-71 273.5 209 64.1
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.5e-71 273.5 218 61.9
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.0e-71 273.1 205 62.9
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 2.6e-71 272.7 249 57.8
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 3.4e-71 272.3 216 59.3
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.7e-70 270.0 227 58.1
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 2.2e-70 269.6 203 63.1
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 3.8e-70 268.9 257 56.0
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 6.5e-70 268.1 234 58.1
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.4e-69 266.9 229 59.0
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 4.6e-68 261.9 223 60.5
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 6.1e-68 261.5 223 59.2
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 7.9e-68 261.2 212 58.0
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.4e-64 250.4 207 61.8
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 6.9e-64 248.1 246 55.7
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.5e-63 245.4 230 53.0
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 7.7e-63 244.6 237 51.5
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.0e-62 244.2 245 53.1
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.4e-59 233.8 226 49.1
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 1.1e-58 230.7 248 47.2
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 9.1e-56 221.1 258 48.8
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 9.1e-56 221.1 216 51.9
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 2.6e-55 219.5 239 46.4
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 2.9e-54 216.1 189 53.4
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 2.9e-54 216.1 226 47.3
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 5.0e-54 215.3 211 51.2
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 6.5e-54 214.9 192 53.6
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 6.5e-54 214.9 218 49.5
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 8.5e-54 214.5 218 49.5
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 4.2e-53 212.2 262 45.8
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 9.4e-53 211.1 266 44.7
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 9.4e-53 211.1 266 44.7
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 1.2e-52 210.7 266 44.7
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 1.2e-52 210.7 263 45.2
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 1.2e-52 210.7 262 44.7
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 1.6e-52 210.3 266 45.1
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 1.6e-52 210.3 266 45.1
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.1e-52 209.9 213 49.8
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 4.7e-52 208.8 262 44.7
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.0e-51 207.6 202 50.5
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 3.0e-51 206.1 269 43.9
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 2.0e-50 203.4 260 45.0
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 7.4e-50 201.4 264 44.3
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 2.4e-48 196.4 261 42.9
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 7.0e-48 194.9 237 49.4
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 3.8e-46 189.1 203 47.8
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 2.1e-44 183.3 123 73.2
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 2.1e-44 183.3 196 46.4
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 1.4e-43 180.6 147 63.9
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-43 180.3 204 45.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 5.7e-42 175.3 197 46.7
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.1e-40 171.0 159 59.7
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 7.0e-40 168.3 204 45.1
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.6e-39 167.2 205 44.4
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.7e-39 166.4 197 44.7
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 3.5e-39 166.0 127 66.9
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 8.0e-36 154.8 186 45.7
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 2.2e-30 136.7 174 46.0
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 2.0e-26 123.6 234 35.0
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 3.4e-26 122.9 244 34.0
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.8e-25 119.8 234 33.3
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 3.7e-25 119.4 217 33.2
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 9.2e-24 114.8 212 35.4
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 2.7e-23 113.2 239 32.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.5e-23 112.8 217 35.0
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 7.3e-21 105.1 232 33.2
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 3.6e-20 102.8 121 43.0
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 2.7e-15 86.7 100 45.0
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 8.6e-14 81.6 78 47.4
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 7.3e-13 78.6 272 27.6
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 5.2e-11 72.4 56 57.1
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 2.0e-10 70.5 161 33.5
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 1.3e-09 67.8 159 34.0
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 2.2e-09 67.0 152 30.3


User provided reference genes

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