Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0046F.1_g026870 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 1.3e-35 152.5 80 100.0
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 2.2e-33 145.2 80 92.5
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 3.7e-33 144.4 80 91.2
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 4.8e-33 144.1 80 91.2
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 4.8e-33 144.1 80 91.2
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 6.3e-33 143.7 80 92.5
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 8.2e-33 143.3 80 92.5
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 8.2e-33 143.3 80 91.2
CSS0017244 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.1e-32 142.9 80 91.2
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 1.1e-32 142.9 80 90.0
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 1.4e-32 142.5 80 90.0
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 1.8e-32 142.1 80 90.0
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.8e-32 142.1 80 90.0
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.8e-32 142.1 80 90.0
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 1.8e-32 142.1 80 91.2
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 1.8e-32 142.1 80 91.2
CSS0033661 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.4e-32 141.7 80 90.0
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 2.4e-32 141.7 80 91.2
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 2.4e-32 141.7 79 92.4
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 2.4e-32 141.7 80 90.0
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 2.4e-32 141.7 80 91.2
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 3.1e-32 141.4 80 90.0
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 4.1e-32 141.0 80 88.8
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 4.1e-32 141.0 80 90.0
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 4.1e-32 141.0 80 90.0
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 6.9e-32 140.2 80 88.8
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 1.2e-31 139.4 80 90.0
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.2e-31 139.4 79 91.1
Gohir.D07G067800 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.2e-31 139.4 79 91.1
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 1.2e-31 139.4 79 91.1
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 1.2e-31 139.4 80 87.5
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 1.5e-31 139.0 80 90.0
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 2.0e-31 138.7 80 88.8
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 2.0e-31 138.7 80 88.8
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 2.0e-31 138.7 80 86.2
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 2.6e-31 138.3 80 87.5
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 3.4e-31 137.9 80 87.5
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 3.4e-31 137.9 80 88.8
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 4.5e-31 137.5 80 86.2
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 4.5e-31 137.5 80 86.2
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 4.5e-31 137.5 80 86.2
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 5.9e-31 137.1 79 89.9
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 5.9e-31 137.1 80 86.2
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 5.9e-31 137.1 80 88.8
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 5.9e-31 137.1 80 85.0
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 7.7e-31 136.7 79 88.6
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 7.7e-31 136.7 80 87.5
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 7.7e-31 136.7 80 86.2
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 7.7e-31 136.7 79 88.6
vmacro19322 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 7.7e-31 136.7 78 89.7
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 1.0e-30 136.3 80 85.0
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.0e-30 136.3 80 86.2
COL.COLO4_30111 Corchorus olitorius HOM05D003444 ORTHO05D003963 1.0e-30 136.3 79 88.6
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.3e-30 136.0 78 89.7
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 1.3e-30 136.0 80 86.2
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 1.3e-30 136.0 80 86.2
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 1.3e-30 136.0 79 88.6
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 1.7e-30 135.6 80 87.5
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.2e-30 135.2 80 83.8
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 2.2e-30 135.2 80 83.8
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 2.2e-30 135.2 80 86.2
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 2.9e-30 134.8 80 85.0
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 2.9e-30 134.8 79 87.3
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 2.9e-30 134.8 79 87.3
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 3.8e-30 134.4 80 86.2
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.8e-30 134.4 78 88.5
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 3.8e-30 134.4 80 85.0
TAR374G1632 Trochodendron aralioides HOM05D003444 ORTHO05D003963 5.0e-30 134.0 80 86.2
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 6.5e-30 133.7 80 82.5
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 6.5e-30 133.7 80 85.0
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 8.5e-30 133.3 80 82.5
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 1.1e-29 132.9 80 82.5
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 1.4e-29 132.5 80 82.5
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 1.4e-29 132.5 80 81.2
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 1.9e-29 132.1 80 82.5
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 1.9e-29 132.1 80 82.5
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 1.9e-29 132.1 80 82.5
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 1.9e-29 132.1 80 82.5
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 1.9e-29 132.1 80 82.5
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 2.5e-29 131.7 80 83.8
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 3.2e-29 131.3 80 82.5
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 3.2e-29 131.3 80 82.5
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 4.2e-29 131.0 80 81.2
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 5.5e-29 130.6 80 82.5
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 5.5e-29 130.6 79 84.8
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 5.5e-29 130.6 79 84.8
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 5.5e-29 130.6 80 83.8
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 5.5e-29 130.6 80 83.8
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 5.5e-29 130.6 80 82.5
QL10p008629 Quercus lobata HOM05D003444 ORTHO05D003963 5.5e-29 130.6 80 82.5
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 5.5e-29 130.6 79 83.5
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 7.2e-29 130.2 80 81.2
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 7.2e-29 130.2 73 91.8
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 9.4e-29 129.8 80 80.0
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.2e-28 129.4 80 81.2
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 1.2e-28 129.4 80 81.2
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 1.2e-28 129.4 80 81.2
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 1.2e-28 129.4 80 82.5
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.6e-28 129.0 80 81.2
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 2.1e-28 128.6 80 78.8
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 3.6e-28 127.9 79 81.0
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 3.6e-28 127.9 79 81.0
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 3.6e-28 127.9 80 81.2
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 3.6e-28 127.9 80 80.0
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 4.6e-28 127.5 80 78.8
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 2.3e-27 125.2 80 80.0
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 3.0e-27 124.8 80 76.2
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 3.9e-27 124.4 80 78.8
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 3.9e-27 124.4 80 78.8
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 3.9e-27 124.4 80 76.2
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 2.0e-26 122.1 80 80.0
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 3.3e-26 121.3 80 75.0
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 3.3e-26 121.3 79 75.9
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 3.3e-26 121.3 79 75.9
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 4.3e-26 120.9 79 77.2
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 4.3e-26 120.9 79 77.2
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 4.3e-26 120.9 79 77.2
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 4.3e-26 120.9 80 76.2
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 5.7e-26 120.6 80 78.8
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 5.7e-26 120.6 79 75.9
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 9.7e-26 119.8 80 76.2
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 9.7e-26 119.8 80 76.2
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 9.7e-26 119.8 80 76.2
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 9.7e-26 119.8 80 76.2
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 9.7e-26 119.8 80 76.2
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 9.7e-26 119.8 80 76.2
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 9.7e-26 119.8 80 76.2
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 1.3e-25 119.4 76 80.3
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 2.8e-25 118.2 79 75.9
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 6.3e-25 117.1 80 73.8
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 6.3e-25 117.1 80 73.8
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 6.3e-25 117.1 80 73.8
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 6.3e-25 117.1 80 73.8
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 6.3e-25 117.1 79 74.7
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 8.2e-25 116.7 80 73.8
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 1.8e-24 115.5 78 74.4
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 3.1e-24 114.8 79 73.4
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 9.1e-24 113.2 79 70.9
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 2.9e-22 108.2 79 67.1
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 2.5e-21 105.1 63 84.1
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 5.5e-21 104.0 65 84.6
AagrBONN_evm.TU.Sc2ySwM_362.1384 Anthoceros agrestis HOM05D003444 ORTHO05D003963 9.4e-21 103.2 79 67.1
Mapoly0061s0094 Marchantia polymorpha HOM05D003444 ORTHO05D003963 7.9e-20 100.1 75 68.0
Pp3c8_10480 Physcomitrium patens HOM05D003444 ORTHO05D003963 1.5e-18 95.9 75 64.0
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 6.3e-17 90.5 73 64.4
SMO270G0025 Selaginella moellendorffii HOM05D003444 ORTHO05D003963 8.2e-17 90.1 75 60.0
SHI35645 Sapria himalayana HOM05D003444 ORTHO05D003963 7.0e-16 87.0 56 78.6
Prupe.5G168700 Prunus persica HOM05D003444 ORTHO05D003963 6.5e-14 80.5 51 80.4
CBR_g57069 Chara braunii HOM05D003444 ORTHO05D003963 1.6e-12 75.9 75 50.7
Lsat_1_v5_gn_4_76300 Lactuca sativa HOM05D003444 ORTHO05D003963 1.6e-12 75.9 45 80.0
CBR_g23963 Chara braunii HOM05D003444 ORTHO05D003963 8.8e-11 70.1 79 40.5


User provided reference genes

Program Settings