Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 2.4e-278 961.4 463 100.0
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 8.8e-212 740.3 463 77.8
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 9.7e-211 736.9 459 78.6
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 4.2e-206 721.5 465 76.6
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 6.1e-205 717.6 465 73.5
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 1.3e-199 699.9 465 73.3
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 5.0e-199 698.0 462 74.2
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 2.5e-198 695.7 467 72.6
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 5.5e-198 694.5 465 72.0
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 4.7e-197 691.4 463 73.4
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 3.0e-196 688.7 460 73.3
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 4.4e-195 684.9 460 72.6
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 7.5e-195 684.1 460 72.8
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 4.8e-194 681.4 465 72.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 8.2e-194 680.6 461 71.1
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 2.0e-192 676.0 460 72.2
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 3.5e-192 675.2 484 70.2
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 7.7e-192 674.1 503 66.8
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 5.0e-191 671.4 494 67.0
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 1.1e-190 670.2 465 72.5
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 3.6e-189 665.2 465 71.0
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 6.1e-189 664.5 465 69.5
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 3.0e-188 662.1 465 71.0
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 4.0e-188 661.8 465 68.6
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 5.2e-188 661.4 498 67.1
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 8.8e-188 660.6 477 66.5
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.2e-187 660.2 465 69.9
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 6.3e-186 654.4 473 68.3
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 1.8e-185 652.9 465 71.0
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 1.6e-184 649.8 469 68.0
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 5.9e-184 647.9 468 67.7
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 2.9e-183 645.6 465 69.5
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 2.9e-183 645.6 467 66.8
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 3.8e-183 645.2 457 67.8
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 5.0e-183 644.8 459 68.0
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 3.2e-182 642.1 461 66.2
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 3.2e-182 642.1 461 66.2
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 1.2e-181 640.2 461 66.2
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 4.7e-181 638.3 463 66.7
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 6.1e-181 637.9 461 65.7
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 1.8e-180 636.3 459 68.0
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 6.8e-180 634.4 461 65.7
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 1.5e-179 633.3 465 67.7
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 2.6e-179 632.5 465 67.1
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.6e-179 632.5 463 66.5
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 3.4e-179 632.1 463 66.3
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 2.2e-178 629.4 457 66.3
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 2.2e-178 629.4 468 65.2
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.8e-178 629.0 473 66.2
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.1e-177 627.1 461 65.3
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 7.0e-177 624.4 465 66.5
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.6e-176 623.2 462 66.0
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.6e-176 623.2 464 64.9
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 2.0e-176 622.9 467 65.3
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 2.0e-176 622.9 460 68.3
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 3.5e-176 622.1 467 65.1
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 7.7e-176 620.9 467 65.7
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.3e-175 620.2 467 64.9
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.7e-175 619.8 534 58.4
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 5.0e-175 618.2 429 71.1
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.5e-174 616.7 460 67.2
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 1.6e-173 613.2 442 68.1
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.6e-173 613.2 467 64.5
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 2.0e-171 606.3 442 70.4
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.9e-170 602.4 562 56.4
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 1.1e-169 600.5 550 57.8
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 2.4e-169 599.4 460 61.5
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 2.7e-168 595.9 457 64.6
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.9e-167 592.0 462 59.7
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.3e-166 589.0 462 59.1
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 7.3e-166 587.8 449 66.1
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 2.3e-164 582.8 416 72.6
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.9e-162 575.9 479 62.6
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 3.5e-160 568.9 483 61.7
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 3.9e-159 565.5 471 60.5
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 6.2e-157 558.1 444 64.4
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 4.1e-153 545.4 415 66.5
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 2.3e-151 539.7 343 74.6
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 5.6e-150 535.0 463 59.0
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.2e-141 507.3 487 54.4
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 4.4e-139 498.8 475 55.6
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 6.0e-136 488.4 424 60.1
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 9.3e-129 464.5 370 64.6
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 5.1e-127 458.8 492 47.4
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 6.6e-127 458.4 407 61.4
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 8.7e-127 458.0 438 57.5
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 3.1e-116 422.9 468 45.5
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 5.8e-115 418.7 469 45.0
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 7.6e-115 418.3 469 45.0
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.3e-114 417.5 316 66.5
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 9.3e-113 411.4 210 89.0
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.4e-107 392.9 349 56.7
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.3e-106 391.0 285 66.7
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 4.2e-105 386.0 219 80.8
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.2e-105 386.0 261 70.9
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 3.6e-104 382.9 416 53.8
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 5.7e-102 375.6 201 84.1
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 8.2e-101 371.7 201 85.1
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.4e-97 360.9 187 86.6
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 5.5e-97 359.0 200 79.0
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.2e-81 306.2 235 57.4
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.2e-78 298.1 169 76.9
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 5.3e-76 289.3 151 90.7
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 5.9e-75 285.8 241 59.8
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.3e-74 284.6 269 57.2
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 2.5e-73 280.4 245 58.4
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 1.4e-71 274.6 203 63.5
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.0e-71 273.5 249 56.6
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 6.3e-69 265.8 257 55.6
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 7.2e-65 252.3 216 59.7
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.2e-64 251.5 239 53.1
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 2.8e-64 250.4 138 82.6
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 5.0e-58 229.6 200 58.0
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.6e-57 226.1 223 50.7
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 8.0e-56 222.2 349 36.1
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 6.8e-55 219.2 179 64.8
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 7.5e-54 215.7 187 61.0
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 4.6e-43 179.9 97 88.7
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.6e-40 171.4 310 37.7
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 4.7e-40 169.9 281 33.1
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-39 168.7 243 44.9
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.9e-37 160.6 88 77.3
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.4e-30 137.1 87 72.4
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.0e-26 124.0 86 66.3
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 3.2e-20 104.0 229 27.1
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 5.6e-17 93.2 57 80.7
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.6e-16 91.7 52 78.8
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 6.9e-15 86.3 101 46.5
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 6.0e-11 73.2 351 23.9
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 7.6e-06 56.2 57 56.1


User provided reference genes

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