Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 4.1e-254 880.9 457 100.0
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 3.3e-227 791.6 408 100.0
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 3.0e-164 582.4 450 69.1
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 5.4e-137 491.9 427 61.8
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 2.7e-136 489.6 423 61.5
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 1.1e-134 484.2 436 59.6
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 1.8e-129 466.8 428 59.3
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 1.6e-128 463.8 425 56.9
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 2.1e-125 453.4 432 58.1
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 1.0e-124 451.1 426 57.3
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 8.9e-124 448.0 493 52.5
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 8.9e-124 448.0 424 56.4
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 8.3e-122 441.4 421 55.6
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 1.1e-121 441.0 424 56.8
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 1.1e-121 441.0 424 54.5
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 3.2e-121 439.5 412 57.0
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 7.0e-121 438.3 423 56.7
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 6.6e-119 431.8 412 56.3
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 1.1e-116 424.5 442 51.6
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 1.8e-116 423.7 410 52.9
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 1.5e-115 420.6 414 53.1
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 7.5e-115 418.3 399 55.6
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 1.3e-114 417.5 420 55.0
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 3.7e-114 416.0 438 50.9
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 8.3e-114 414.8 430 52.3
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 3.9e-111 406.0 415 49.4
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 8.6e-111 404.8 446 51.3
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 1.5e-110 404.1 428 51.4
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 2.1e-109 400.2 457 48.6
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 4.7e-109 399.1 440 48.2
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 6.2e-109 398.7 432 49.5
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 6.2e-109 398.7 440 48.4
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 3.1e-108 396.4 410 52.7
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 6.8e-108 395.2 396 54.3
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 2.6e-107 393.3 415 51.6
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 5.8e-107 392.1 453 47.0
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 9.9e-107 391.3 413 52.3
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 3.7e-106 389.4 408 50.7
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 3.7e-106 389.4 431 49.0
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 3.7e-106 389.4 443 47.9
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 1.1e-105 387.9 419 48.4
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 1.9e-105 387.1 413 51.3
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 3.2e-105 386.3 433 49.4
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 4.1e-105 386.0 414 50.2
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 7.1e-105 385.2 430 50.0
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 9.2e-105 384.8 435 48.5
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 9.2e-105 384.8 437 50.1
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 2.7e-104 383.3 419 48.9
Migut.G00796 Erythranthe guttata HOM05D006351 ORTHO05D007796 4.6e-104 382.5 417 49.6
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 6.0e-104 382.1 465 46.0
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 1.3e-103 380.9 465 46.0
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 1.3e-103 380.9 430 49.3
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 1.7e-103 380.6 454 46.5
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 3.9e-103 379.4 416 51.2
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 1.5e-102 377.5 411 51.1
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 3.3e-102 376.3 437 47.1
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 3.3e-102 376.3 430 48.8
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 1.6e-101 374.0 426 48.4
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 2.4e-100 370.2 430 47.0
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 3.1e-100 369.8 430 47.4
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 6.8e-100 368.6 430 50.7
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 4.4e-99 365.9 421 49.2
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 5.8e-99 365.5 428 51.4
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 2.2e-98 363.6 416 49.0
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 3.8e-98 362.8 480 43.8
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 1.7e-95 354.0 411 49.6
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 3.6e-93 346.3 433 45.7
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 3.1e-92 343.2 410 44.9
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 7.6e-91 338.6 413 45.3
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 2.2e-90 337.0 410 46.1
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 4.2e-89 332.8 410 44.4
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 1.2e-88 331.3 420 44.8
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 2.3e-87 327.0 427 45.0
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 5.1e-87 325.9 403 44.7
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 8.1e-85 318.5 423 42.6
COL.COLO4_18917 Corchorus olitorius HOM05D006351 ORTHO05D007796 1.1e-84 318.2 430 44.4
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 9.0e-84 315.1 422 41.5
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 3.4e-83 313.2 439 43.7
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 1.7e-82 310.8 340 47.9
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 3.2e-81 306.6 423 41.1
ATR0629G052 Amborella trichopoda HOM05D006351 ORTHO05D007796 5.4e-81 305.8 424 41.0
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 6.0e-80 302.4 434 40.3
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 3.9e-79 299.7 305 51.5
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 7.4e-78 295.4 347 47.6
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 1.4e-76 291.2 430 40.2
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 4.2e-73 279.6 422 38.2
CAN.G142.3 Capsicum annuum HOM05D006351 ORTHO05D007796 1.9e-70 270.8 309 48.5
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 4.0e-68 263.1 291 49.1
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 1.3e-66 258.1 434 36.6
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 3.8e-66 256.5 415 38.3
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 9.3e-65 251.9 414 35.7
unitig_0.g2412 Utricularia gibba HOM05D006351 ORTHO05D007796 5.7e-62 242.7 402 37.1
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 3.8e-58 229.9 433 36.5
FAN24G1918 Fragaria x ananassa HOM05D006351 ORTHO05D007796 3.9e-47 193.4 216 53.2
Ah.10g035670 Amaranthus hybridus HOM05D006351 ORTHO05D007796 1.7e-45 188.0 454 32.4
FAN20G2359 Fragaria x ananassa HOM05D006351 ORTHO05D007796 4.8e-45 186.4 216 52.3
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 1.1e-44 185.3 366 36.3
FAN27G0329 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.1e-44 185.3 213 50.7
CANSAT25G0983 Cannabis sativa HOM05D006351 ORTHO05D007796 6.5e-42 176.0 162 53.1
FAN15G0846 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.6e-40 171.4 216 49.5
CDE02G0453 Ceratophyllum demersum HOM05D006351 ORTHO05D007796 2.1e-40 171.0 284 37.7
Zm00001eb028280 Zea mays HOM05D006351 ORTHO05D007796 1.3e-37 161.8 267 36.0
MBI14_g30358_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 3.2e-33 147.1 163 47.9
CAN.G142.4 Capsicum annuum HOM05D006351 ORTHO05D007796 2.3e-31 141.0 176 44.9
Medtr1g013030 Medicago truncatula HOM05D006351 ORTHO05D007796 4.8e-29 133.3 157 45.9
Cc11_g00420 Coffea canephora HOM05D006351 ORTHO05D007796 9.4e-25 119.0 118 54.2
SEGI_10292 Sequoiadendron giganteum HOM05D006351 ORTHO05D000001 8.3e-21 105.9 174 33.9
AagrBONN_evm.TU.Sc2ySwM_368.1425 Anthoceros agrestis HOM05D006351 ORTHO05D007796 2.8e-16 90.9 443 22.3
SMO200G0034 Selaginella moellendorffii HOM05D006351 ORTHO05D007796 2.8e-13 80.9 350 26.0
Medtr1g012280 Medicago truncatula HOM05D006351 ORTHO05D007796 1.2e-11 75.5 131 42.7


User provided reference genes

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