Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0039F.1_g024430 Hydrangea macrophylla HOM05D006605 ORTHO05D008277 4.4e-28 127.9 100 100.0
Hma1.2p1_0039F.1_g024420 Hydrangea macrophylla HOM05D006605 ORTHO05D008277 7.1e-26 120.6 63 100.0
Ciclev10032666m.g Citrus clementina HOM05D006605 ORTHO05D008277 1.7e-19 99.4 64 78.1
CSS0025701 Camellia sinensis var. sinensis HOM05D006605 ORTHO05D008277 1.4e-18 96.3 61 83.6
Sed0013536 Sechium edule HOM05D006605 ORTHO05D008277 2.4e-18 95.5 64 76.6
Lj8C79T16 Lonicera japonica HOM05D006605 ORTHO05D008277 5.4e-18 94.4 65 78.5
Actinidia02925 Actinidia chinensis HOM05D006605 ORTHO05D008277 2.7e-17 92.0 61 80.3
Dinv03373 Davidia involucrata HOM05D006605 ORTHO05D008277 3.5e-17 91.7 64 78.1
Dinv06757 Davidia involucrata HOM05D006605 ORTHO05D008277 3.5e-17 91.7 64 78.1
PGSC0003DMG400034939 Solanum tuberosum HOM05D006605 ORTHO05D008277 7.9e-17 90.5 65 78.5
TWI15G0193 Tripterygium wilfordii HOM05D006605 ORTHO05D008277 1.0e-16 90.1 62 72.6
Prupe.2G239300 Prunus persica HOM05D006605 ORTHO05D008277 1.3e-16 89.7 64 71.9
ClCG11G006700 Citrullus lanatus HOM05D006605 ORTHO05D008277 1.8e-16 89.4 64 70.3
QL08p061156 Quercus lobata HOM05D006605 ORTHO05D008277 1.8e-16 89.4 60 76.7
Sopen06g032890 Solanum pennellii HOM05D006605 ORTHO05D008277 1.8e-16 89.4 65 76.9
Cc02_g07470 Coffea canephora HOM05D006605 ORTHO05D008277 2.3e-16 89.0 65 73.8
Dinv03376 Davidia involucrata HOM05D006605 ORTHO05D008277 2.3e-16 89.0 64 75.0
Glyma.18G035300 Glycine max HOM05D006605 ORTHO05D008277 2.3e-16 89.0 64 71.9
Medtr3g068150 Medicago truncatula HOM05D006605 ORTHO05D008277 2.3e-16 89.0 64 71.9
Nitab4.5_0000120g0080 Nicotiana tabacum HOM05D006605 ORTHO05D008277 3.9e-16 88.2 65 75.4
arahy.Tifrunner.gnm1.ann1.SV7RC5 Arachis hypogaea HOM05D006605 ORTHO05D008277 5.1e-16 87.8 64 68.8
Glyma.11G222100 Glycine max HOM05D006605 ORTHO05D008277 5.1e-16 87.8 64 70.3
Thecc.10G038800 Theobroma cacao HOM05D006605 ORTHO05D008277 5.1e-16 87.8 64 71.9
CiPaw.02G186200 Carya illinoinensis HOM05D006605 ORTHO05D008277 6.7e-16 87.4 57 80.7
PGR142G0607 Punica granatum HOM05D006605 ORTHO05D008277 8.7e-16 87.0 57 78.9
arahy.Tifrunner.gnm1.ann1.SDQ61V Arachis hypogaea HOM05D006605 ORTHO05D008277 1.1e-15 86.7 63 69.8
CANSAT56G0196 Cannabis sativa HOM05D006605 ORTHO05D008277 1.1e-15 86.7 60 75.0
Migut.F00754 Erythranthe guttata HOM05D006605 ORTHO05D008277 1.1e-15 86.7 59 79.7
Lj6g0021847 Lotus japonicus HOM05D006605 ORTHO05D008277 1.1e-15 86.7 64 68.8
Oeu001504.1 Olea europaea HOM05D006605 ORTHO05D008277 1.1e-15 86.7 62 74.2
Potri.008G058800 Populus trichocarpa HOM05D006605 ORTHO05D008277 1.1e-15 86.7 55 80.0
VMungo1383G1515 Vigna mungo HOM05D006605 ORTHO05D008277 1.1e-15 86.7 64 68.8
COL.COLO4_25481 Corchorus olitorius HOM05D006605 ORTHO05D008277 1.5e-15 86.3 64 70.3
Hund13792 Selenicereus undatus HOM05D006605 ORTHO05D008277 1.5e-15 86.3 58 74.1
Ah.16g102590 Amaranthus hybridus HOM05D006605 ORTHO05D008277 1.9e-15 85.9 50 84.0
Lalb_Chr18g0053081 Lupinus albus HOM05D006605 ORTHO05D008277 2.5e-15 85.5 64 67.2
MD07G1203100 Malus domestica HOM05D006605 ORTHO05D008277 3.3e-15 85.1 64 70.3
Potri.010G200000 Populus trichocarpa HOM05D006605 ORTHO05D008277 3.3e-15 85.1 55 80.0
Sabra10G0154200 Salix brachista HOM05D006605 ORTHO05D008277 3.3e-15 85.1 55 80.0
Ca_08185_v3 Cicer arietinum L. HOM05D006605 ORTHO05D008277 4.3e-15 84.7 64 68.8
Eucgr.G02956 Eucalyptus grandis HOM05D006605 ORTHO05D008277 4.3e-15 84.7 56 76.8
Aqoxy2G02333 Aquilegia oxysepala HOM05D006605 ORTHO05D008277 5.6e-15 84.3 64 70.3
Psat5g124720 Pisum sativum HOM05D006605 ORTHO05D008277 5.6e-15 84.3 64 68.8
Rhsim03G0134500 Rhododendron simsii HOM05D006605 ORTHO05D008277 5.6e-15 84.3 61 72.1
EL10Ac2g04706 Beta vulgaris HOM05D006605 ORTHO05D008277 7.4e-15 84.0 69 66.7
RcHm_v2.0_Chr1g0368241 Rosa chinensis HOM05D006605 ORTHO05D008277 7.4e-15 84.0 64 68.8
Phvul.001G235600 Phaseolus vulgaris HOM05D006605 ORTHO05D008277 9.6e-15 83.6 64 67.2
TAR636G1277 Trochodendron aralioides HOM05D006605 ORTHO05D008277 9.6e-15 83.6 58 75.9
GSVIVG01016495001 Vitis vinifera HOM05D006605 ORTHO05D008277 9.6e-15 83.6 51 82.4
Haze_17112 Corylus avellana HOM05D006605 ORTHO05D008277 1.3e-14 83.2 59 72.9
Duzib106G0051 Durio zibethinus HOM05D006605 ORTHO05D008277 1.3e-14 83.2 64 67.2
Gohir.A10G222000 Gossypium hirsutum HOM05D006605 ORTHO05D008277 1.3e-14 83.2 56 75.0
Gohir.D10G234300 Gossypium hirsutum HOM05D006605 ORTHO05D008277 1.3e-14 83.2 56 75.0
Gorai.011G267900 Gossypium raimondii HOM05D006605 ORTHO05D008277 1.3e-14 83.2 56 75.0
MBI05_g35187_MAGBIO Magnolia biondii HOM05D006605 ORTHO05D008277 1.3e-14 83.2 64 68.8
Nitab4.5_0002872g0060 Nicotiana tabacum HOM05D006605 ORTHO05D008277 1.3e-14 83.2 65 72.3
unitig_747.g21792 Utricularia gibba HOM05D006605 ORTHO05D008277 1.6e-14 82.8 65 70.8
Sc14g0004650 Simmondsia chinensis HOM05D006605 ORTHO05D008277 3.7e-14 81.6 53 77.4
Peaxi162Scf00736g00213 Petunia axillaris HOM05D006605 ORTHO05D008277 4.8e-14 81.3 64 71.9
PSO513G0127 Papaver somniferum HOM05D006605 ORTHO05D008277 1.8e-13 79.3 54 79.6
TPR.G2861 Trifolium pratense HOM05D006605 ORTHO05D008277 1.8e-13 79.3 58 72.4
MELO3C008233.2 Cucumis melo HOM05D006605 ORTHO05D008277 2.4e-13 79.0 64 65.6
DCAR_011727 Daucus carota HOM05D006605 ORTHO05D008277 2.4e-13 79.0 57 73.7
FAN01G2186 Fragaria x ananassa HOM05D006605 ORTHO05D008277 2.4e-13 79.0 64 62.5
FAN06G4444 Fragaria x ananassa HOM05D006605 ORTHO05D008277 2.4e-13 79.0 64 62.5
HanXRQChr08g0221071 Helianthus annuus HOM05D006605 ORTHO05D008277 2.4e-13 79.0 52 80.8
THA.LOC104810044 Tarenaya hassleriana HOM05D006605 ORTHO05D008277 3.1e-13 78.6 56 71.4
Hund16063 Selenicereus undatus HOM05D006605 ORTHO05D008277 5.3e-13 77.8 58 69.0
CsaV3_6G001320 Cucumis sativus L. HOM05D006605 ORTHO05D008277 6.9e-13 77.4 64 64.1
FAN01G0046 Fragaria x ananassa HOM05D006605 ORTHO05D008277 6.9e-13 77.4 64 60.9
SEGI_09593 Sequoiadendron giganteum HOM05D006605 ORTHO05D008277 6.9e-13 77.4 48 70.8
Lsat_1_v5_gn_8_14921 Lactuca sativa HOM05D006605 ORTHO05D008277 9.0e-13 77.0 57 73.7
Manes.07G118800 Manihot esculenta HOM05D006605 ORTHO05D008277 9.0e-13 77.0 52 75.0
FAN06G3081 Fragaria x ananassa HOM05D006605 ORTHO05D008277 1.2e-12 76.6 64 60.9
AUR62012132 Chenopodium quinoa HOM05D006605 ORTHO05D008277 1.5e-12 76.3 54 75.9
PSO339G4488 Papaver somniferum HOM05D006605 ORTHO05D008277 1.5e-12 76.3 54 75.9
MSTRG.27369 Avicennia marina HOM05D006605 ORTHO05D008277 2.0e-12 75.9 53 77.4
CAN.G394.84 Capsicum annuum HOM05D006605 ORTHO05D008277 2.0e-12 75.9 62 67.7
FAN03G2768 Fragaria x ananassa HOM05D006605 ORTHO05D008277 2.0e-12 75.9 64 59.4
Aa31LG1G26470 Aethionema arabicum HOM05D006605 ORTHO05D008277 5.8e-12 74.3 60 63.3
ATR0559G079 Amborella trichopoda HOM05D006605 ORTHO05D008277 5.8e-12 74.3 47 78.7
Carub.0004s2751 Capsella rubella HOM05D006605 ORTHO05D008277 5.8e-12 74.3 55 69.1
Cc01_g04360 Coffea canephora HOM05D006605 ORTHO05D008277 5.8e-12 74.3 58 74.1
AagrBONN_evm.TU.Sc2ySwM_117.3127 Anthoceros agrestis HOM05D006605 ORTHO05D008277 7.6e-12 73.9 48 68.8
Thhalv10001625m.g Eutrema salsugineum HOM05D006605 ORTHO05D008277 1.7e-11 72.8 55 70.9
BcaB02g08862 Brassica carinata HOM05D006605 ORTHO05D008277 2.9e-11 72.0 59 66.1
A05p05030 Brassica napus HOM05D006605 ORTHO05D008277 2.9e-11 72.0 59 66.1
BraA05t19477Z Brassica rapa HOM05D006605 ORTHO05D008277 2.9e-11 72.0 59 66.1
FvH4_7g23000 Fragaria vesca HOM05D006605 ORTHO05D008277 2.9e-11 72.0 64 59.4
AL4G44020 Arabidopsis lyrata HOM05D006605 ORTHO05D008277 3.8e-11 71.6 51 72.5
Mapoly0057s0063 Marchantia polymorpha HOM05D006605 ORTHO05D008277 4.9e-11 71.2 53 58.5
Pp3c11_10480 Physcomitrium patens HOM05D006605 ORTHO05D008277 4.9e-11 71.2 50 68.0
CDE09G0303 Ceratophyllum demersum HOM05D006605 ORTHO05D008277 8.4e-11 70.5 56 67.9
AT2G44920 Arabidopsis thaliana HOM05D006605 ORTHO05D008277 1.1e-10 70.1 51 70.6
Sp4g26990 Schrenkiella parvula HOM05D006605 ORTHO05D008277 1.1e-10 70.1 54 68.5
CARHR140160 Cardamine hirsuta HOM05D006605 ORTHO05D008277 1.4e-10 69.7 51 68.6
HPP92_019456 Vanilla planifolia HOM05D006605 ORTHO05D008277 1.4e-10 69.7 43 76.7
BcaC02g12262 Brassica carinata HOM05D006605 ORTHO05D008277 1.9e-10 69.3 59 64.4
C04p05870 Brassica napus HOM05D006605 ORTHO05D008277 1.9e-10 69.3 59 64.4
BolC4t22217H Brassica oleracea HOM05D006605 ORTHO05D008277 1.9e-10 69.3 59 64.4
ECA233G2444 Erigeron canadensis HOM05D006605 ORTHO05D008277 1.9e-10 69.3 66 63.6
Os01g0144100 Oryza sativa ssp. japonica HOM05D006605 ORTHO05D008277 1.9e-10 69.3 45 75.6
SMO364G0932 Selaginella moellendorffii HOM05D006605 ORTHO05D008277 2.7e-09 65.5 46 73.9
Zm00001eb335810 Zea mays HOM05D006605 ORTHO05D008277 1.8e-08 62.8 44 70.5
Atru.BG.275.p Acer truncatum HOM05D006605 ORTHO05D008277 1.1e-07 60.1 28 96.4
Nn2g13462 Nelumbo nucifera HOM05D006605 ORTHO05D008277 1.9e-07 59.3 29 89.7
vmacro07051 Vaccinium macrocarpon HOM05D006605 ORTHO05D008277 4.3e-07 58.2 27 96.3
Cpa.g.sc19.283 Carica papaya HOM05D006605 ORTHO05D008277 1.3e-06 56.6 27 92.6


User provided reference genes

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