Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 1.7e-235 818.9 406 100.0
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.2e-118 429.9 436 56.2
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 5.3e-112 408.7 418 54.8
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.5e-111 407.1 416 53.1
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.5e-111 407.1 412 55.8
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 3.4e-111 406.0 428 51.4
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.9e-109 400.2 432 52.5
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.9e-109 400.2 438 52.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.2e-109 398.3 424 52.6
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.0e-107 394.4 429 50.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.8e-107 393.7 431 51.7
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.1e-106 391.0 489 46.2
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 4.3e-106 389.0 399 52.9
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.3e-105 387.5 467 48.2
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.3e-105 387.5 462 50.2
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 8.2e-105 384.8 437 52.4
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 4.1e-104 382.5 428 49.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 2.0e-103 380.2 414 50.5
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.4e-103 379.4 415 50.6
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 7.7e-103 378.3 515 45.6
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.5e-102 374.8 415 50.4
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.4e-101 374.0 418 51.0
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.5e-101 373.2 421 49.9
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.5e-101 372.1 421 49.6
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 9.4e-101 371.3 433 48.5
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.2e-100 370.9 432 50.7
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.6e-100 370.5 410 50.7
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-100 369.8 416 50.5
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.4e-99 367.5 421 49.2
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.5e-98 364.0 429 48.5
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 5.7e-98 362.1 418 47.8
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 9.7e-98 361.3 430 48.4
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.3e-97 360.9 416 49.3
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.7e-97 360.5 443 48.5
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.2e-97 360.1 431 47.8
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.8e-97 359.8 421 47.0
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 6.3e-97 358.6 393 50.9
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 8.2e-97 358.2 408 50.0
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.8e-96 357.1 411 49.1
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 2.4e-96 356.7 407 48.6
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 2.0e-95 353.6 423 48.9
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.0e-94 351.3 407 48.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 2.2e-94 350.1 428 47.4
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 8.5e-94 348.2 434 46.3
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 8.5e-94 348.2 429 47.3
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.1e-93 347.8 435 47.8
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.1e-93 347.8 447 45.9
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 5.5e-93 345.5 429 47.6
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 9.4e-93 344.7 403 47.6
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 9.4e-93 344.7 430 47.2
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-92 344.0 434 45.4
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 6.1e-92 342.0 427 46.1
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 6.1e-92 342.0 425 47.5
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.3e-91 340.1 411 46.5
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.3e-91 340.1 410 48.0
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-91 340.1 295 58.6
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.9e-91 339.3 383 49.3
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 2.6e-90 336.7 425 46.6
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 7.4e-90 335.1 434 46.3
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.7e-89 334.0 424 46.0
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.7e-89 332.8 415 46.3
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 3.7e-89 332.8 412 47.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 6.3e-89 332.0 422 45.5
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 6.3e-89 332.0 469 44.1
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.1e-88 331.3 413 45.5
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 1.1e-88 331.3 411 47.0
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 3.1e-88 329.7 412 45.1
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 5.3e-88 328.9 422 45.0
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.7e-86 323.9 412 44.7
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.7e-86 323.9 412 44.7
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.9e-86 323.2 410 46.6
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.9e-86 323.2 429 44.3
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 5.0e-86 322.4 424 45.0
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 6.5e-86 322.0 412 44.9
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 8.5e-86 321.6 413 44.8
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 8.5e-86 321.6 413 44.8
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.6e-84 317.4 417 45.1
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 2.1e-84 317.0 445 43.1
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 8.0e-84 315.1 437 43.0
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.8e-83 313.9 415 43.9
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 5.2e-83 312.4 428 43.9
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 6.7e-83 312.0 417 43.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 8.8e-83 311.6 412 43.4
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.2e-82 311.2 291 54.3
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 2.0e-82 310.5 435 43.7
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.0e-82 310.5 413 44.1
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.4e-82 309.3 412 43.7
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 9.7e-82 308.1 438 44.1
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.3e-81 307.8 412 44.7
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.2e-81 307.0 433 43.6
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.8e-81 306.6 413 42.1
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.8e-81 306.6 428 42.3
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.8e-81 306.6 431 44.1
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.8e-81 306.6 522 39.8
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 7.0e-80 302.0 281 54.4
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 9.1e-80 301.6 312 54.8
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 9.1e-80 301.6 430 43.3
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 9.1e-80 301.6 309 52.1
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 6.1e-76 288.9 428 41.8
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.0e-75 288.1 435 42.8
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 1.8e-75 287.3 410 43.7
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.5e-74 284.3 389 43.4
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 2.6e-74 283.5 428 41.6
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.4e-74 282.7 298 52.3
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 4.4e-74 282.7 227 59.5
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.8e-73 280.0 436 41.5
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.2e-71 274.6 385 43.6
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 5.5e-69 265.8 412 38.8
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 5.2e-67 259.2 403 39.0
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.2e-63 248.1 277 49.1
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.7e-63 246.9 287 47.7
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 3.5e-63 246.5 287 47.7
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 3.5e-63 246.5 277 49.1
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 3.5e-63 246.5 277 49.1
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.4e-59 234.6 346 42.5
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.9e-57 226.9 354 42.7
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.5e-55 219.9 303 44.9
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 6.8e-51 205.7 288 43.1
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.9e-49 200.3 332 38.3
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.4e-48 197.2 164 59.8
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 7.0e-48 195.7 141 66.0
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.3e-46 191.4 284 39.8
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.5e-45 188.0 166 59.0
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.6e-44 184.5 276 40.2
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 3.6e-44 183.3 124 68.5
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 3.7e-41 173.3 278 37.1
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 6.4e-41 172.6 217 44.7
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-40 171.8 112 73.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.0e-39 166.0 120 66.7
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 3.6e-36 156.8 281 35.6
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.2e-36 156.0 106 69.8
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 6.8e-35 152.5 228 43.0
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 9.9e-34 148.7 281 35.2
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-33 147.9 99 72.7
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 2.9e-33 147.1 225 42.7
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 9.6e-29 132.1 69 79.7
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 1.4e-27 128.3 260 33.8
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.4e-27 127.5 310 30.6
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.4e-27 127.5 221 38.9
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.4e-25 119.4 141 49.6
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 1.9e-24 117.9 93 58.1
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.0e-22 112.1 69 73.9
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.3e-22 111.7 76 67.1
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.1e-15 87.8 47 78.7
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.3e-14 85.1 213 31.5
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.8e-14 84.7 224 31.2
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 5.6e-13 79.7 73 49.3
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 4.8e-12 76.6 282 27.3
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-08 65.5 43 62.8
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.5e-08 64.3 176 30.7
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 7.1e-08 62.8 80 51.2
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.5e-07 60.5 95 38.9
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.9e-07 59.3 152 32.2
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-06 58.9 54 50.0
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.7e-06 56.2 54 46.3
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.7e-06 56.2 42 50.0


User provided reference genes

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