Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 3.4e-118 428.3 213 100.0
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.3e-114 415.6 216 96.8
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 4.4e-102 374.8 215 87.0
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.2e-99 366.7 216 82.9
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.6e-96 356.3 216 80.6
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.3e-93 346.7 216 79.6
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.4e-92 343.2 216 77.8
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 1.9e-92 342.8 220 78.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.9e-92 342.8 199 86.4
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.7e-91 339.0 217 78.8
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 7.9e-91 337.4 216 79.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.3e-90 336.7 216 79.2
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.3e-89 332.0 214 77.1
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 9.6e-89 330.5 217 75.1
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 6.2e-88 327.8 218 76.6
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 5.3e-87 324.7 214 75.2
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.9e-87 324.3 216 75.5
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 6.9e-87 324.3 218 76.1
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 9.0e-87 323.9 214 73.8
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 2.6e-86 322.4 216 75.0
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 2.6e-86 322.4 218 75.7
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 5.8e-86 321.2 206 75.7
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.3e-85 320.1 213 75.6
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.2e-85 319.3 216 74.5
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 2.9e-85 318.9 212 76.4
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 8.4e-85 317.4 216 73.1
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 8.4e-85 317.4 216 73.1
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.5e-84 315.8 222 73.0
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.2e-84 315.5 216 74.5
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 4.2e-84 315.1 208 74.5
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.2e-83 313.5 214 74.3
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 2.7e-83 312.4 216 73.6
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 3.5e-83 312.0 217 72.8
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 6.0e-83 311.2 216 71.8
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 7.9e-83 310.8 216 73.1
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.0e-82 310.5 215 73.5
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.8e-82 309.7 216 71.3
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 3.0e-82 308.9 217 71.4
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 8.7e-82 307.4 216 70.8
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 8.7e-82 307.4 214 72.0
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 8.7e-82 307.4 202 77.2
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 2.5e-81 305.8 216 71.8
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 4.3e-81 305.1 216 71.8
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.3e-80 303.5 211 72.0
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.3e-80 303.5 222 69.4
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.6e-80 303.1 216 71.8
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.6e-80 303.1 218 69.7
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.1e-80 302.8 214 70.6
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 3.7e-80 302.0 221 69.2
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 3.7e-80 302.0 218 71.1
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 6.2e-80 301.2 226 69.9
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.1e-79 300.4 228 69.3
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.4e-79 300.1 216 70.8
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.4e-79 299.3 216 71.3
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 2.4e-79 299.3 218 72.5
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.4e-79 299.3 217 71.9
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 5.3e-79 298.1 216 70.8
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 6.9e-79 297.7 228 68.9
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 9.0e-79 297.4 207 70.0
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.2e-78 297.0 202 75.7
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.5e-78 296.6 214 70.1
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.0e-78 296.2 216 69.0
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.0e-78 296.2 214 69.2
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.0e-78 296.2 214 69.2
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 2.6e-78 295.8 216 69.0
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 4.5e-78 295.0 216 69.0
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 5.8e-78 294.7 214 69.2
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 7.6e-78 294.3 215 69.3
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.3e-77 293.5 215 69.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.7e-77 293.1 216 69.9
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 2.9e-77 292.4 221 68.3
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.9e-77 292.4 213 70.0
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 2.9e-77 292.4 222 65.3
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 5.0e-77 291.6 223 65.0
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 7.2e-76 287.7 214 67.8
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 1.2e-75 287.0 224 63.8
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.2e-75 287.0 218 67.4
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 2.7e-75 285.8 224 63.8
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 2.7e-75 285.8 224 63.8
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.7e-75 285.8 213 69.0
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 3.5e-75 285.4 220 65.0
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 4.6e-75 285.0 215 68.4
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 6.1e-75 284.6 224 63.4
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 6.1e-75 284.6 224 63.4
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 7.9e-75 284.3 215 67.9
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 7.9e-75 284.3 218 65.1
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.0e-74 283.9 224 63.8
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 2.3e-74 282.7 223 63.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.3e-74 282.7 206 68.9
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 3.0e-74 282.3 224 63.4
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.1e-73 280.4 185 71.9
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.5e-73 279.3 223 67.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 2.5e-73 279.3 213 64.8
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.5e-73 279.3 246 61.8
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 3.3e-73 278.9 221 63.3
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 5.7e-73 278.1 202 68.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 7.4e-73 277.7 222 63.1
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.6e-72 276.6 220 67.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.2e-72 276.2 216 64.8
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 2.2e-72 276.2 218 63.3
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.8e-72 275.8 216 66.2
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.8e-72 275.8 209 65.1
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 3.1e-71 272.3 199 69.8
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 3.1e-71 272.3 221 63.3
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 3.1e-71 272.3 212 67.0
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 9.0e-71 270.8 206 68.0
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.5e-70 268.5 199 66.8
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 7.7e-70 267.7 221 61.1
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.3e-69 266.9 202 64.9
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.9e-68 263.1 214 60.7
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.5e-68 261.5 177 74.0
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 9.4e-68 260.8 184 72.3
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 2.1e-67 259.6 217 60.8
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 1.4e-66 256.9 221 62.0
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 8.8e-66 254.2 216 61.1
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.5e-65 253.4 221 61.5
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 2.8e-64 249.2 187 66.3
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 1.4e-63 246.9 191 64.9
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.7e-61 240.0 254 53.9
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.7e-61 240.0 254 53.9
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.4e-60 236.9 182 68.7
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 7.9e-59 231.1 193 63.2
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 8.8e-58 227.6 146 78.1
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 2.0e-57 226.5 149 77.9
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.4e-55 220.3 143 76.2
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 4.5e-54 215.3 145 71.7
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 7.0e-47 191.4 158 60.1
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 5.9e-46 188.3 198 47.5
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 5.0e-45 185.3 142 64.8
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 1.9e-44 183.3 135 69.6
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 2.5e-44 183.0 143 67.1
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 5.5e-44 181.8 223 43.9
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.2e-43 180.6 161 55.9
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 8.0e-43 177.9 125 70.4
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 6.3e-40 168.3 124 66.9
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 6.5e-37 158.3 143 54.5
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 4.7e-35 152.1 208 39.9
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 8.0e-35 151.4 107 71.0
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 2.2e-32 143.3 218 44.0
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 2.8e-32 142.9 173 42.8
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.1e-31 141.0 206 39.8
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 4.1e-31 139.0 143 46.9
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 6.6e-29 131.7 141 44.7
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 5.7e-25 118.6 78 70.5
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.7e-25 118.6 184 37.5
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.4e-23 114.0 76 67.1
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 2.0e-22 110.2 91 62.6
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 9.5e-20 101.3 161 37.3
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.2e-17 94.4 77 61.0
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.2e-14 84.3 58 65.5
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 2.0e-14 83.6 50 74.0
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 2.7e-14 83.2 49 71.4
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 4.6e-14 82.4 67 58.2
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 2.3e-13 80.1 87 52.9
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 2.3e-13 80.1 48 72.9
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.0e-13 79.7 44 77.3
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.5e-12 77.4 78 52.6
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.8e-11 73.2 42 81.0
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 6.8e-10 68.6 56 60.7
PSO063G7338 Papaver somniferum HOM05D004585 ORTHO05D302184 4.1e-07 59.3 124 34.7
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 5.4e-07 58.9 38 71.1
Lj1P996T49 Lonicera japonica HOM05D003145 ORTHO05D003586 5.4e-07 58.9 87 33.3
Duzib138G1408 Durio zibethinus HOM05D001495 ORTHO05D001391 1.6e-06 57.4 114 33.3
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 2.1e-06 57.0 85 32.9
vmacro02513 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 2.1e-06 57.0 74 39.2
Ah.15g093640 Amaranthus hybridus HOM05D001495 ORTHO05D001391 3.5e-06 56.2 115 32.2
unitig_61.g26147 Utricularia gibba HOM05D001495 ORTHO05D001391 3.5e-06 56.2 74 39.2
Rhsim03G0179900 Rhododendron simsii HOM05D003145 ORTHO05D003586 4.6e-06 55.8 92 31.5
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.0e-06 55.5 72 33.3
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 6.0e-06 55.5 43 62.8
Migut.N02120 Erythranthe guttata HOM05D001495 ORTHO05D001391 7.8e-06 55.1 74 37.8
Oeu024228.1 Olea europaea HOM05D003145 ORTHO05D003586 7.8e-06 55.1 126 29.4
QL09p014402 Quercus lobata HOM05D003145 ORTHO05D003586 7.8e-06 55.1 79 35.4
Zm00001eb346250 Zea mays HOM05D001495 ORTHO05D001391 7.8e-06 55.1 112 31.2


User provided reference genes

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