Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.5e-228 795.0 388 100.0
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.2e-184 649.0 415 78.6
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 2.2e-179 632.5 415 76.1
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 4.8e-179 631.3 415 74.5
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.7e-176 622.9 415 73.3
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-175 619.8 412 74.5
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.0e-172 609.4 415 71.8
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 2.2e-171 605.9 415 71.3
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 2.8e-171 605.5 415 72.5
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 3.1e-170 602.1 411 72.0
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.9e-168 595.5 416 70.2
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 2.9e-168 595.5 414 71.3
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-168 595.5 412 72.1
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.0e-168 594.7 415 70.6
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.5e-168 594.3 411 71.5
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 2.5e-167 592.4 415 70.6
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 2.7e-166 589.0 414 70.3
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 4.7e-166 588.2 417 69.1
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.7e-166 588.2 412 68.7
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.0e-166 587.4 415 71.1
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 5.2e-165 584.7 411 69.6
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 2.6e-164 582.4 415 69.4
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.7e-158 562.4 413 67.6
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 9.7e-156 553.9 411 67.4
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 9.7e-156 553.9 413 66.3
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.7e-152 543.1 409 67.0
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.9e-151 539.7 381 68.0
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.2e-151 538.5 382 70.4
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 8.0e-150 534.3 413 64.2
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.8e-149 533.1 411 66.4
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 8.8e-149 530.8 417 63.1
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.2e-148 530.4 414 66.7
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.6e-148 529.3 371 70.9
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.3e-147 524.6 322 78.0
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 8.3e-147 524.2 412 62.6
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.4e-146 523.5 414 62.8
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.4e-146 522.7 397 65.2
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 1.6e-145 520.0 397 65.7
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 7.7e-145 517.7 397 64.7
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 7.7e-145 517.7 397 64.7
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 8.6e-144 514.2 406 64.3
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 1.1e-143 513.8 415 62.9
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 9.8e-140 500.7 399 62.4
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 3.7e-139 498.8 399 62.4
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.1e-138 497.3 404 60.1
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 4.1e-138 495.4 417 60.4
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 4.1e-138 495.4 400 60.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 5.4e-138 495.0 417 60.2
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.2e-137 493.8 406 60.1
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.6e-137 493.4 386 61.7
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.5e-137 492.3 413 60.0
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.9e-135 486.5 408 59.3
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.3e-135 485.7 408 62.3
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.3e-135 485.7 408 62.3
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 5.2e-133 478.4 409 58.2
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 2.0e-132 476.5 386 61.7
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 5.8e-132 474.9 409 57.7
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 9.8e-132 474.2 392 62.5
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 2.9e-131 472.6 410 57.6
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.9e-131 472.6 411 58.2
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 6.4e-131 471.5 391 61.9
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 6.4e-131 471.5 377 63.4
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 9.2e-130 467.6 406 57.9
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 8.6e-128 461.1 390 61.5
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 5.6e-127 458.4 404 56.4
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 8.0e-126 454.5 410 56.8
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 5.2e-125 451.8 410 57.3
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.8e-125 451.4 376 58.5
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 8.9e-125 451.1 413 56.4
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.9e-123 446.0 412 54.4
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-122 443.7 376 58.5
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 3.2e-122 442.6 406 55.4
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.0e-120 437.6 395 56.5
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.3e-120 436.4 395 56.2
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.1e-120 435.3 385 57.9
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 6.6e-120 434.9 426 55.9
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.9e-119 433.3 299 70.6
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 4.7e-118 428.7 411 53.3
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.1e-117 427.6 386 57.5
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.8e-117 426.8 407 55.0
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.8e-117 426.8 393 55.5
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 8.9e-117 424.5 404 56.7
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-116 424.1 410 54.4
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.5e-116 423.7 386 57.3
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.5e-116 423.7 316 65.5
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 9.9e-116 421.0 380 58.2
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.7e-115 420.2 409 52.6
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 3.7e-115 419.1 354 59.0
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.2e-114 416.0 413 53.0
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.1e-114 415.6 387 56.3
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 9.2e-114 414.5 398 56.3
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 9.2e-114 414.5 405 52.8
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.5e-113 412.5 414 55.1
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 4.6e-113 412.1 422 55.0
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.0e-113 411.8 422 55.0
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 7.8e-113 411.4 407 51.4
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 2.3e-112 409.8 396 54.3
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.1e-112 408.7 407 52.6
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.6e-112 408.3 393 55.2
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 6.6e-112 408.3 417 53.2
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 8.6e-112 407.9 412 51.9
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.1e-111 407.5 331 63.7
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.5e-111 407.1 390 55.6
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.5e-111 407.1 396 54.0
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 1.5e-111 407.1 420 54.0
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.9e-111 406.8 422 51.7
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 9.5e-111 404.4 350 60.0
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-110 404.1 416 53.4
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 2.8e-110 402.9 415 52.5
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 2.8e-110 402.9 406 51.2
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.4e-109 399.8 391 55.8
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 6.8e-109 398.3 409 50.4
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 4.9e-107 392.1 391 51.4
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.9e-107 392.1 390 51.8
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 6.4e-107 391.7 386 51.6
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.9e-106 390.2 325 60.3
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.2e-106 389.4 390 51.5
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 4.6e-105 385.6 388 50.5
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 6.0e-105 385.2 388 50.5
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 6.0e-105 385.2 388 50.5
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 7.8e-105 384.8 388 49.7
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 6.6e-104 381.7 373 51.5
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.3e-103 379.4 403 52.4
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 3.3e-103 379.4 383 53.5
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 1.6e-102 377.1 393 49.6
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.8e-102 375.6 391 49.4
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 4.4e-100 369.0 350 52.9
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 8.4e-99 364.8 412 49.8
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 9.3e-98 361.3 389 50.9
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 3.3e-95 352.8 412 45.6
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.3e-91 340.9 416 46.9
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 2.9e-91 339.7 360 51.4
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.7e-89 333.2 408 45.6
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 2.3e-88 330.1 387 45.7
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 6.7e-88 328.6 374 46.8
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.7e-88 328.6 410 41.7
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 6.2e-86 322.0 291 56.7
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 5.3e-85 318.9 379 47.0
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 5.8e-84 315.5 390 44.4
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.2e-83 313.5 400 39.5
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 1.0e-80 304.7 396 41.4
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 7.4e-79 298.5 290 52.1
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.4e-79 298.5 401 42.6
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.4e-79 298.5 345 43.5
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.6e-76 290.0 364 44.0
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.7e-73 280.0 295 53.2
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 3.9e-72 276.2 233 57.5
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 8.7e-72 275.0 367 42.8
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.3e-71 272.7 279 53.0
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 9.0e-69 265.0 403 40.2
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.6e-68 263.5 344 42.7
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 7.4e-63 245.4 281 44.8
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 4.8e-62 242.7 390 38.2
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 2.3e-56 223.8 178 59.0
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 4.4e-55 219.5 231 51.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.7e-54 217.6 203 57.6
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 6.7e-48 195.7 173 59.0
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.4e-47 192.2 228 46.9
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 1.7e-46 191.0 336 36.6
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.2e-44 184.9 167 58.7
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 1.5e-42 177.9 127 68.5
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.7e-41 173.7 307 37.8
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.2e-34 150.2 176 48.3
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.4e-32 144.8 151 49.7
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-29 133.7 185 41.6
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.7e-28 130.6 302 30.8
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 1.9e-26 124.4 130 48.5
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 2.3e-24 117.5 147 43.5
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.4e-16 91.7 114 41.2
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 4.1e-13 80.1 367 24.8
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 2.7e-12 77.4 334 25.1
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.0e-11 75.5 259 27.4
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.2e-08 63.2 48 62.5


User provided reference genes

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