Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 7.5e-84 313.9 171 100.0
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 2.8e-62 242.3 173 79.2
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.3e-59 233.4 173 77.5
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.3e-59 233.4 173 75.7
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 2.2e-59 232.6 173 75.1
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 2.9e-59 232.3 173 74.6
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 6.4e-59 231.1 173 74.6
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 8.3e-59 230.7 173 74.6
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.4e-58 229.9 174 76.4
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.4e-58 229.9 173 73.4
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.9e-58 229.6 165 77.6
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 2.4e-58 229.2 173 73.4
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.4e-58 229.2 173 75.1
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 2.4e-58 229.2 172 73.3
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 3.2e-58 228.8 173 73.4
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.4e-58 228.0 173 74.6
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 7.1e-58 227.6 174 75.9
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 7.1e-58 227.6 173 74.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.6e-57 226.5 173 71.7
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.5e-57 225.3 175 73.1
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 4.6e-57 224.9 173 73.4
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 7.8e-57 224.2 173 72.8
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.0e-56 223.8 173 74.0
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.0e-56 223.8 173 72.3
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.0e-56 223.8 173 75.1
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.3e-56 223.4 173 73.4
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.3e-56 223.4 173 74.6
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 1.7e-56 223.0 173 72.3
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 1.7e-56 223.0 173 71.7
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.3e-56 222.6 173 72.3
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.3e-56 222.6 173 72.3
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 3.9e-56 221.9 173 72.8
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 5.1e-56 221.5 173 72.3
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 5.1e-56 221.5 173 70.5
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 8.6e-56 220.7 173 74.0
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 8.6e-56 220.7 173 73.4
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.1e-55 220.3 173 72.8
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 1.1e-55 220.3 173 71.1
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.5e-55 219.9 173 72.3
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.5e-55 219.9 173 71.1
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.9e-55 219.5 173 70.5
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.9e-55 219.5 173 72.3
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.5e-55 219.2 173 72.3
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 2.5e-55 219.2 173 70.5
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 3.3e-55 218.8 173 72.3
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 4.3e-55 218.4 175 71.4
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 4.3e-55 218.4 173 70.5
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 5.6e-55 218.0 173 71.1
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.6e-55 218.0 173 70.5
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 7.3e-55 217.6 173 70.5
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.6e-54 216.5 174 71.3
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.6e-54 216.5 173 70.5
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.6e-54 216.5 174 71.8
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.8e-54 215.7 174 71.3
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.8e-54 215.7 173 71.1
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.8e-54 215.7 173 69.4
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.8e-54 215.7 173 69.4
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.7e-54 214.9 173 68.2
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.2e-54 214.5 173 70.5
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.1e-53 213.8 173 71.1
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 2.3e-53 212.6 173 66.5
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 3.1e-53 212.2 173 68.8
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 3.1e-53 212.2 173 65.3
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 4.0e-53 211.8 173 69.9
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.8e-53 211.1 173 70.5
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 6.8e-53 211.1 173 71.1
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 8.9e-53 210.7 173 69.4
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 8.9e-53 210.7 173 67.1
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.5e-52 209.9 169 71.6
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.5e-52 209.9 171 68.4
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 2.0e-52 209.5 173 68.8
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.6e-52 209.1 173 69.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 3.4e-52 208.8 173 68.8
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 3.4e-52 208.8 173 68.8
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 3.4e-52 208.8 169 72.2
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 5.8e-52 208.0 173 67.6
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 5.8e-52 208.0 173 67.6
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 5.8e-52 208.0 173 67.6
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 5.8e-52 208.0 174 68.4
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 7.6e-52 207.6 173 67.6
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 9.9e-52 207.2 173 68.8
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 9.9e-52 207.2 175 68.0
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 1.3e-51 206.8 173 67.1
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 1.7e-51 206.5 174 67.8
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.9e-51 205.7 176 65.3
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.7e-51 205.3 173 68.2
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 4.9e-51 204.9 173 65.3
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.4e-50 203.4 173 65.9
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.4e-50 203.4 173 67.6
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.9e-50 203.0 173 68.8
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.4e-50 202.6 174 68.4
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 4.1e-50 201.8 173 66.5
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 7.1e-50 201.1 173 68.2
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 7.1e-50 201.1 173 68.2
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 7.1e-50 201.1 173 68.2
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.6e-49 199.9 165 67.9
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.6e-49 199.9 159 73.0
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 2.1e-49 199.5 173 67.6
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 2.1e-49 199.5 173 67.6
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 3.5e-49 198.7 173 65.3
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 3.5e-49 198.7 173 66.5
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 3.5e-49 198.7 173 65.3
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 4.6e-49 198.4 176 65.9
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 6.0e-49 198.0 173 65.9
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 6.0e-49 198.0 173 65.9
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 7.8e-49 197.6 173 66.5
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 7.8e-49 197.6 173 64.7
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 7.8e-49 197.6 173 66.5
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-48 197.2 173 64.2
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.3e-48 196.8 173 63.6
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.7e-48 196.4 173 65.9
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.7e-48 196.4 173 63.0
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.3e-48 196.1 173 64.2
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 2.3e-48 196.1 170 65.3
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.0e-48 195.7 173 64.7
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.1e-48 194.9 173 60.7
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 6.6e-48 194.5 173 61.8
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 8.6e-48 194.1 152 71.7
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.5e-47 193.4 173 64.2
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.5e-47 193.4 174 64.4
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 2.5e-47 192.6 173 64.7
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 3.3e-47 192.2 173 64.7
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.3e-47 192.2 173 61.8
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 3.3e-47 192.2 173 62.4
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 4.3e-47 191.8 170 65.3
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 7.3e-47 191.0 173 60.7
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 7.3e-47 191.0 166 65.7
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 7.3e-47 191.0 173 63.6
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 9.6e-47 190.7 173 64.2
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 9.6e-47 190.7 173 62.4
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 2.8e-46 189.1 174 62.6
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 8.1e-46 187.6 169 62.1
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 1.1e-45 187.2 175 62.9
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 3.1e-45 185.7 173 62.4
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 8.9e-45 184.1 171 60.2
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 8.9e-45 184.1 173 63.0
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.0e-44 183.0 171 64.3
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 6.4e-43 177.9 100 88.0
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.6e-41 173.3 102 81.4
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 4.6e-41 171.8 150 70.0
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.3e-40 169.5 102 79.4
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.4e-37 160.2 100 75.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 9.0e-37 157.5 147 61.2
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.2e-36 157.1 174 54.6
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 9.9e-36 154.1 161 57.1
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.3e-35 153.7 175 53.7
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.7e-33 146.0 120 65.8
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.0e-32 144.1 174 49.4
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 2.1e-30 136.3 175 46.3
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 3.6e-30 135.6 219 42.0
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.2e-28 130.6 175 47.4
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.2e-28 130.6 173 45.7
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 1.1e-26 124.0 145 49.7
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 3.2e-26 122.5 140 49.3
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 5.4e-26 121.7 174 42.5
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 9.3e-26 120.9 172 43.6
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 2.1e-25 119.8 173 45.1
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.1e-25 119.8 70 82.9
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.3e-24 116.3 70 80.0
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.5e-23 113.6 181 47.5
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 3.1e-21 105.9 175 43.4
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.6e-17 93.6 81 64.2
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.9e-17 91.3 67 71.6
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.3e-14 84.0 44 86.4
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 3.2e-10 69.3 73 67.1


User provided reference genes

Program Settings