Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.5e-121 439.5 222 100.0
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 4.7e-54 215.3 152 77.6
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 4.7e-54 215.3 152 77.6
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 6.1e-54 214.9 148 79.1
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 6.1e-54 214.9 139 82.7
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.0e-53 214.2 151 78.8
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.0e-53 214.2 151 78.1
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 1.4e-53 213.8 168 73.2
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.8e-53 213.4 161 73.9
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.3e-53 213.0 148 80.4
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.3e-53 213.0 148 79.7
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 2.3e-53 213.0 148 79.7
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 5.2e-53 211.8 170 72.4
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 5.2e-53 211.8 168 72.6
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 6.8e-53 211.5 148 77.7
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.9e-53 211.1 148 79.1
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 8.9e-53 211.1 148 77.7
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.2e-52 210.7 148 78.4
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 2.0e-52 209.9 148 78.4
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 2.0e-52 209.9 148 77.7
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 2.0e-52 209.9 148 78.4
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 4.4e-52 208.8 148 77.7
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 5.7e-52 208.4 148 77.0
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 7.5e-52 208.0 167 71.3
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 9.8e-52 207.6 157 73.9
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 9.8e-52 207.6 139 80.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.3e-51 207.2 148 77.0
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.3e-51 207.2 148 77.0
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 1.3e-51 207.2 148 77.7
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.7e-51 206.8 148 76.4
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.7e-51 206.8 148 76.4
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.7e-51 206.8 137 79.6
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 2.2e-51 206.5 150 75.3
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 2.2e-51 206.5 148 77.7
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.2e-51 206.5 151 74.2
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.2e-51 206.5 137 78.8
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 2.9e-51 206.1 148 73.0
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.9e-51 206.1 169 72.2
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 3.7e-51 205.7 157 71.3
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 3.7e-51 205.7 157 71.3
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.7e-51 205.7 148 76.4
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 4.9e-51 205.3 157 71.3
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 4.9e-51 205.3 137 80.3
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 4.9e-51 205.3 148 75.7
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 6.4e-51 204.9 157 71.3
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 6.4e-51 204.9 151 74.2
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 6.4e-51 204.9 151 74.2
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 8.3e-51 204.5 148 76.4
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 8.3e-51 204.5 151 73.5
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.1e-50 204.1 150 77.3
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-50 203.8 168 68.5
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-50 203.8 168 68.5
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-50 203.8 168 68.5
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-50 203.8 168 68.5
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.4e-50 203.8 145 77.9
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.4e-50 203.8 148 77.0
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.8e-50 203.4 148 75.7
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.8e-50 203.4 148 75.7
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 2.4e-50 203.0 142 75.4
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 3.2e-50 202.6 151 72.8
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.1e-50 202.2 145 77.2
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 4.1e-50 202.2 148 75.7
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 5.4e-50 201.8 167 69.5
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 9.2e-50 201.1 148 74.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 9.2e-50 201.1 148 75.0
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 9.2e-50 201.1 148 75.0
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.2e-49 200.7 135 79.3
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 2.0e-49 199.9 151 72.8
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.0e-49 199.9 145 76.6
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.0e-49 199.9 134 79.9
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.0e-49 199.9 145 76.6
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 2.7e-49 199.5 148 74.3
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.7e-49 199.5 144 77.1
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 3.5e-49 199.1 137 77.4
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 3.5e-49 199.1 148 74.3
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 7.8e-49 198.0 151 71.5
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 7.8e-49 198.0 166 69.3
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.0e-48 197.6 135 77.0
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.3e-48 197.2 192 62.0
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 3.0e-48 196.1 135 76.3
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 5.0e-48 195.3 142 76.1
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 8.6e-48 194.5 141 75.2
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.9e-47 193.4 151 70.9
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 2.5e-47 193.0 148 71.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.3e-47 192.2 139 72.7
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 4.3e-47 192.2 157 68.8
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 6.2e-46 188.3 139 71.2
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.0e-45 187.6 147 69.4
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 1.0e-45 187.6 137 72.3
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.4e-45 187.2 148 68.9
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.4e-45 187.2 147 69.4
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 2.3e-45 186.4 137 72.3
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 4.0e-45 185.7 137 71.5
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 5.2e-45 185.3 137 71.5
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 6.8e-45 184.9 137 71.5
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 6.8e-45 184.9 137 71.5
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.2e-44 184.1 141 72.3
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 2.6e-44 183.0 137 71.5
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.6e-44 183.0 140 67.1
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 3.4e-44 182.6 137 70.1
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 3.4e-44 182.6 137 70.1
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 3.4e-44 182.6 137 70.1
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.3e-43 180.6 122 80.3
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.7e-43 180.3 141 64.5
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 6.4e-43 178.3 135 65.9
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 8.3e-43 177.9 121 77.7
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 8.3e-43 177.9 165 63.6
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.1e-42 177.6 152 63.2
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.4e-42 177.2 136 68.4
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.4e-42 176.4 165 63.0
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 3.2e-42 176.0 166 63.3
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 5.4e-42 175.3 131 72.5
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 5.4e-42 175.3 154 59.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 9.5e-39 164.5 115 77.4
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 4.7e-38 162.2 118 72.9
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.5e-36 157.1 148 65.5
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.3e-35 154.1 119 68.9
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.7e-35 153.7 120 70.8
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 6.4e-35 151.8 139 58.3
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-34 149.8 147 62.6
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.3e-32 144.1 152 49.3
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 3.0e-32 142.9 153 51.0
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 3.3e-31 139.4 148 53.4
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-26 124.0 167 49.1
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 7.3e-23 111.7 86 76.7
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 8.1e-22 108.2 80 78.8
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.1e-21 107.8 109 49.5
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.7e-19 100.5 145 49.7
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.3e-16 90.9 66 77.3
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 5.1e-16 89.0 53 81.1
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.5e-15 86.7 82 67.1
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 1.6e-14 84.0 53 75.5
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.2e-12 77.8 76 65.8
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 4.8e-06 55.8 61 55.7


User provided reference genes

Program Settings