Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 7.2e-273 943.3 490 100.0
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 6.4e-213 744.2 501 82.2
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 4.8e-192 674.9 490 76.7
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 6.5e-189 664.5 490 75.3
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 8.4e-189 664.1 490 75.5
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 1.2e-187 660.2 490 75.9
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 4.6e-187 658.3 490 75.1
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 4.6e-187 658.3 490 74.9
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 1.3e-186 656.8 490 75.1
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 1.8e-186 656.4 490 75.3
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.8e-186 656.4 490 74.7
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.8e-186 656.4 490 75.1
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 2.3e-186 656.0 490 74.5
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.3e-186 656.0 490 74.9
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 2.3e-186 656.0 490 74.1
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.0e-186 655.6 490 74.1
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 3.0e-186 655.6 490 74.7
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 3.9e-186 655.2 489 74.6
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 5.1e-186 654.8 490 74.1
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 5.1e-186 654.8 490 74.1
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 6.7e-186 654.4 490 74.7
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 6.7e-186 654.4 490 74.7
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 8.7e-186 654.1 490 74.3
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 1.1e-185 653.7 490 74.1
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 1.9e-185 652.9 490 74.7
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 7.4e-185 651.0 490 74.1
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 1.6e-184 649.8 490 74.1
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 2.2e-184 649.4 490 73.3
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 3.7e-184 648.7 490 73.7
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.7e-184 648.7 490 73.5
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 1.4e-183 646.7 490 73.7
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 2.4e-183 646.0 490 73.5
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 4.1e-183 645.2 493 73.2
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 4.1e-183 645.2 490 73.5
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 5.3e-183 644.8 490 72.9
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 6.9e-183 644.4 490 73.3
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 6.9e-183 644.4 490 73.5
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 2.6e-182 642.5 490 72.9
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 3.4e-182 642.1 490 73.1
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 3.4e-182 642.1 490 72.9
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 4.5e-182 641.7 490 73.3
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 4.5e-182 641.7 490 72.7
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 4.5e-182 641.7 490 72.4
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 1.0e-181 640.6 490 71.6
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 1.0e-181 640.6 490 73.3
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 1.0e-181 640.6 490 73.3
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.7e-181 639.8 490 72.4
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 2.9e-181 639.0 495 72.3
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 2.9e-181 639.0 490 73.1
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 3.8e-181 638.6 563 66.1
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 5.0e-181 638.3 490 73.1
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 5.0e-181 638.3 490 73.1
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 8.5e-181 637.5 490 72.0
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 1.4e-180 636.7 490 72.4
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 1.9e-180 636.3 491 72.5
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 3.2e-180 635.6 490 72.4
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 4.2e-180 635.2 490 72.7
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 1.6e-179 633.3 490 72.2
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 2.7e-179 632.5 490 72.9
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 3.6e-179 632.1 490 71.8
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 3.6e-179 632.1 490 71.6
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 6.1e-179 631.3 490 70.6
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.0e-178 630.6 490 72.2
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 3.9e-178 628.6 491 72.1
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.9e-178 628.6 491 72.1
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.1e-177 627.1 491 71.9
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 3.3e-177 625.5 490 71.4
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 4.3e-177 625.2 490 72.2
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 1.7e-176 623.2 491 71.3
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 3.7e-176 622.1 490 71.6
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.7e-176 622.1 491 71.3
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 1.4e-175 620.2 493 69.6
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 3.1e-175 619.0 490 70.6
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 9.1e-175 617.5 490 70.0
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.1e-172 610.5 493 69.8
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 1.9e-172 609.8 498 68.7
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 2.5e-172 609.4 492 69.5
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 1.2e-171 607.1 490 69.0
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 1.0e-170 604.0 510 68.4
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 1.8e-170 603.2 490 68.4
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 1.8e-170 603.2 490 68.2
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 1.8e-170 603.2 484 69.8
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 3.0e-170 602.4 490 68.4
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 3.0e-170 602.4 490 68.4
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 3.0e-170 602.4 490 68.4
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 5.1e-170 601.7 490 68.2
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 6.7e-170 601.3 490 69.0
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 1.1e-169 600.5 490 70.2
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 1.5e-169 600.1 490 68.2
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 1.5e-169 600.1 490 68.2
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 2.6e-169 599.4 490 68.4
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 2.6e-169 599.4 490 68.4
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 2.6e-169 599.4 490 68.4
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 3.3e-169 599.0 490 68.4
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 3.3e-169 599.0 490 68.8
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 4.4e-169 598.6 490 69.6
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 7.4e-169 597.8 490 68.4
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 7.4e-169 597.8 490 68.2
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 9.7e-169 597.4 490 68.2
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 9.7e-169 597.4 490 68.2
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 1.3e-168 597.0 569 62.6
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 2.2e-168 596.3 529 66.9
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 3.7e-168 595.5 388 83.2
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 5.3e-167 591.7 490 69.4
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 5.3e-167 591.7 490 69.0
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 7.0e-167 591.3 532 64.1
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 1.5e-166 590.1 447 73.4
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 1.9e-164 583.2 399 79.4
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.5e-164 582.8 460 71.5
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 9.4e-164 580.9 490 68.8
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 6.1e-163 578.2 490 66.1
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 2.3e-162 576.2 490 65.7
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 9.1e-159 564.3 418 75.4
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 2.5e-156 556.2 490 61.6
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 9.1e-151 537.7 490 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 3.5e-150 535.8 489 59.3
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 7.7e-150 534.6 490 59.0
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 9.4e-148 527.7 490 63.5
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 5.7e-137 491.9 490 60.6
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 6.4e-136 488.4 377 70.3
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 1.1e-135 487.6 492 60.2
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 3.6e-131 472.6 488 54.5
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 1.6e-126 457.2 364 71.4
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 2.4e-111 406.8 404 60.4
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 4.6e-102 375.9 287 73.2
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 1.2e-97 361.3 487 44.1
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 1.1e-95 354.8 246 79.7
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 1.5e-89 334.3 494 40.9
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 1.9e-79 300.8 241 67.2
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 1.8e-77 294.3 244 67.6
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 9.6e-76 288.5 494 38.7
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 5.5e-63 246.1 180 75.6
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 2.7e-62 243.8 180 74.4
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 2.0e-49 201.1 246 52.0
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 3.5e-49 200.3 365 37.0
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 2.2e-48 197.6 146 69.9
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 1.2e-36 158.7 273 44.0
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 4.8e-35 153.3 95 85.3
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 4.8e-35 153.3 95 85.3
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 1.1e-31 142.1 170 45.9
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 4.3e-15 87.0 52 78.8
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 6.8e-13 79.7 73 64.4
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 1.1e-07 62.4 49 67.3


User provided reference genes

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