Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 2.2e-71 272.3 152 100.0
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 9.1e-41 170.6 152 70.4
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.2e-40 170.2 152 71.7
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.3e-39 166.8 153 70.6
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 1.7e-39 166.4 152 68.4
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 2.9e-39 165.6 152 68.4
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 2.9e-39 165.6 152 68.4
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 5.0e-39 164.9 152 67.8
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 6.5e-39 164.5 152 68.4
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 1.1e-38 163.7 152 67.8
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 2.5e-38 162.5 152 67.8
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 2.5e-38 162.5 152 66.4
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.5e-38 162.5 152 67.1
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 2.5e-38 162.5 150 67.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 2.5e-38 162.5 152 67.1
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 3.2e-38 162.2 153 68.0
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 3.2e-38 162.2 152 66.4
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 3.2e-38 162.2 152 66.4
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 4.2e-38 161.8 152 67.1
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 4.2e-38 161.8 153 68.0
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 5.5e-38 161.4 152 67.1
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 5.5e-38 161.4 152 67.1
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 7.2e-38 161.0 152 66.4
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 7.2e-38 161.0 152 66.4
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 7.2e-38 161.0 152 67.1
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 7.2e-38 161.0 152 66.4
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.2e-37 160.2 152 66.4
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 2.1e-37 159.5 152 65.8
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 2.1e-37 159.5 150 66.0
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 2.1e-37 159.5 152 66.4
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 3.6e-37 158.7 152 66.4
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 3.6e-37 158.7 152 66.4
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 4.7e-37 158.3 152 65.8
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.7e-37 158.3 155 66.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.7e-37 158.3 152 65.1
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 8.0e-37 157.5 152 65.8
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 8.0e-37 157.5 152 65.8
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.8e-36 156.4 156 65.4
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 2.3e-36 156.0 153 66.0
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 3.0e-36 155.6 152 65.8
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.0e-36 155.6 154 65.6
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 4.0e-36 155.2 152 65.1
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.0e-36 155.2 155 65.2
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 4.0e-36 155.2 156 65.4
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 5.2e-36 154.8 153 66.0
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.2e-35 153.7 152 64.5
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 2.0e-35 152.9 153 64.1
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 4.4e-35 151.8 155 65.2
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 5.7e-35 151.4 156 62.8
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 5.7e-35 151.4 155 65.2
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 7.5e-35 151.0 152 63.8
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 9.7e-35 150.6 152 63.8
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.7e-34 149.8 152 63.2
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 2.2e-34 149.4 155 64.5
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 2.2e-34 149.4 155 63.9
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 2.2e-34 149.4 155 64.5
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 2.8e-34 149.1 152 63.8
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 2.8e-34 149.1 153 63.4
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 2.8e-34 149.1 152 63.2
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 3.7e-34 148.7 156 64.1
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 3.7e-34 148.7 152 63.2
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 3.7e-34 148.7 152 63.8
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 3.7e-34 148.7 152 62.5
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 3.7e-34 148.7 152 62.5
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 4.8e-34 148.3 153 62.7
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 6.3e-34 147.9 152 63.2
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 8.2e-34 147.5 155 63.9
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.1e-33 147.1 148 64.2
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 1.4e-33 146.7 152 63.8
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.8e-33 146.4 152 62.5
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 3.1e-33 145.6 155 62.6
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.1e-33 145.2 140 66.4
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.2e-32 143.7 152 62.5
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.2e-32 143.7 150 60.0
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.6e-32 143.3 152 63.2
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 3.5e-32 142.1 150 59.3
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 4.5e-32 141.7 152 60.5
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 7.7e-32 141.0 146 62.3
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 7.7e-32 141.0 185 53.5
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 7.7e-32 141.0 150 58.7
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.0e-31 140.6 152 62.5
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.0e-31 140.6 148 62.2
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.3e-31 140.2 146 61.6
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.3e-31 140.2 153 62.7
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 2.2e-31 139.4 144 62.5
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 3.8e-31 138.7 139 64.0
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 3.8e-31 138.7 144 62.5
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 5.0e-31 138.3 144 62.5
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 1.9e-30 136.3 153 58.2
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 2.5e-30 136.0 152 59.9
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 5.5e-30 134.8 152 59.9
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 2.7e-29 132.5 151 57.6
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 6.1e-29 131.3 152 58.6
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.4e-28 130.2 151 58.3
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 5.2e-28 128.3 153 59.5
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 8.8e-28 127.5 150 56.0
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 7.5e-27 124.4 155 58.1
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 1.3e-26 123.6 156 57.1
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 3.7e-26 122.1 152 55.9
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.7e-26 122.1 155 57.4
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.7e-26 122.1 155 57.4
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 8.3e-26 120.9 150 56.0
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.8e-25 119.8 155 56.1
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 2.4e-25 119.4 75 89.3
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 4.1e-25 118.6 150 54.7
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 9.1e-25 117.5 146 54.8
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 1.2e-24 117.1 152 55.9
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 5.9e-24 114.8 130 57.7
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 5.9e-24 114.8 153 55.6
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.0e-23 114.0 116 62.9
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 2.9e-23 112.5 78 80.8
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 5.0e-23 111.7 118 61.9
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 6.5e-23 111.3 155 54.2
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 1.5e-22 110.2 152 52.0
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.5e-22 110.2 152 53.3
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 5.5e-22 108.2 155 53.5
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 2.1e-21 106.3 155 52.9
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.8e-21 105.9 118 61.0
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 8.0e-21 104.4 116 56.0
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 4.0e-20 102.1 116 56.9
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 6.8e-20 101.3 68 80.9
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 6.8e-20 101.3 68 82.4
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 1.2e-19 100.5 152 50.7
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 4.4e-19 98.6 257 36.6
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.7e-18 96.7 69 78.3
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 2.8e-18 95.9 119 54.6
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 3.7e-18 95.5 66 77.3
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.8e-17 93.2 68 75.0
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.0e-16 89.7 58 86.2
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 3.8e-15 85.5 109 55.0
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 4.3e-14 82.0 54 83.3
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 7.3e-14 81.3 155 41.3
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 1.2e-13 80.5 152 43.4
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 2.1e-13 79.7 119 43.7
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 4.7e-13 78.6 67 71.6
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 3.0e-12 75.9 99 53.5
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 5.2e-12 75.1 74 64.9
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 5.7e-11 71.6 63 71.4
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 8.3e-10 67.8 48 79.2
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 4.1e-09 65.5 67 61.2
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 9.2e-09 64.3 68 51.5
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 1.7e-07 60.1 48 70.8
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.3e-07 59.7 40 80.0


User provided reference genes

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