Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.3e-46 186.8 91 100.0
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.3e-46 186.8 91 100.0
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.7e-37 157.9 86 88.4
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.9e-30 135.6 89 74.2
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 4.0e-28 127.9 89 67.4
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.5e-27 124.4 93 68.8
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.4e-25 119.4 98 64.3
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.2e-25 118.2 93 65.6
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 4.2e-25 117.9 89 65.2
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.2e-25 117.9 91 64.8
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 4.2e-25 117.9 90 63.3
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 4.2e-25 117.9 90 64.4
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 9.3e-25 116.7 90 64.4
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 2.1e-24 115.5 90 62.2
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 2.7e-24 115.2 89 61.8
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 6.0e-24 114.0 89 61.8
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 1.3e-23 112.8 90 61.1
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.3e-23 112.8 90 57.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.3e-23 112.8 90 64.4
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 3.9e-23 111.3 90 62.2
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.9e-23 111.3 87 62.1
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 6.7e-23 110.5 89 61.8
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 8.7e-23 110.2 90 57.8
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.1e-22 109.8 91 59.3
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.5e-22 109.4 90 55.6
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.5e-22 109.4 90 55.6
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.9e-22 109.0 90 58.9
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.5e-22 108.6 90 64.4
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 3.3e-22 108.2 87 64.4
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 4.3e-22 107.8 89 58.4
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 5.7e-22 107.5 89 57.3
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 7.4e-22 107.1 90 56.7
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 9.7e-22 106.7 90 55.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 9.7e-22 106.7 89 58.4
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.3e-21 106.3 89 60.7
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.6e-21 105.9 89 57.3
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.6e-21 105.9 90 60.0
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 2.2e-21 105.5 90 55.6
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.8e-21 105.1 89 58.4
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.8e-21 105.1 89 55.1
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 2.8e-21 105.1 81 61.7
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 3.7e-21 104.8 89 57.3
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 4.8e-21 104.4 89 57.3
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 6.3e-21 104.0 90 55.6
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.3e-21 104.0 90 55.6
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 6.3e-21 104.0 86 60.5
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 8.2e-21 103.6 90 56.7
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.1e-20 103.2 82 58.5
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.4e-20 102.8 90 55.6
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.4e-20 102.8 89 59.6
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.8e-20 102.4 89 58.4
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 1.8e-20 102.4 90 62.2
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.8e-20 102.4 89 57.3
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.8e-20 102.4 89 57.3
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.4e-20 102.1 90 56.7
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 2.4e-20 102.1 91 54.9
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 2.4e-20 102.1 90 57.8
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.4e-20 102.1 90 55.6
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 3.1e-20 101.7 89 59.6
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 3.1e-20 101.7 83 61.4
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.3e-20 100.9 90 54.4
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.3e-20 100.9 90 54.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 5.3e-20 100.9 89 60.7
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 5.3e-20 100.9 82 61.0
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 5.3e-20 100.9 89 56.2
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 6.9e-20 100.5 89 59.6
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 9.0e-20 100.1 89 59.6
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.2e-19 99.8 90 52.2
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 2.0e-19 99.0 90 55.6
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 2.0e-19 99.0 92 54.3
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.0e-19 99.0 89 55.1
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 3.4e-19 98.2 91 56.0
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 4.5e-19 97.8 84 59.5
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 4.5e-19 97.8 91 54.9
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 4.5e-19 97.8 81 56.8
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 4.5e-19 97.8 87 57.5
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.3e-18 96.3 84 58.3
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.3e-18 96.3 84 58.3
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.3e-18 96.3 84 58.3
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.7e-18 95.9 84 58.3
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 2.2e-18 95.5 82 59.8
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.2e-18 95.5 82 57.3
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.8e-18 94.7 89 53.9
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 6.5e-18 94.0 89 51.7
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.1e-17 93.2 89 51.7
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.9e-17 92.4 81 54.3
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.9e-17 92.4 81 55.6
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.9e-17 92.4 93 53.8
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 4.2e-17 91.3 90 48.9
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 7.2e-17 90.5 92 48.9
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 9.3e-17 90.1 91 49.5
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 9.3e-17 90.1 92 48.9
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.6e-16 89.4 93 52.7
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 2.1e-16 89.0 82 54.9
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.1e-16 89.0 81 53.1
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 3.6e-16 88.2 84 53.6
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 4.6e-16 87.8 93 48.4
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.1e-16 87.4 90 47.8
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 6.1e-16 87.4 89 50.6
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 6.1e-16 87.4 91 46.2
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.0e-15 86.7 89 50.6
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.8e-15 85.9 89 49.4
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 3.9e-15 84.7 93 49.5
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 8.8e-15 83.6 84 50.0
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.5e-14 82.8 89 53.9
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.5e-14 82.8 90 47.8
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.7e-14 80.9 92 46.7
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 9.7e-14 80.1 91 42.9
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.2e-13 79.0 81 51.9
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 2.8e-13 78.6 94 51.1
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.7e-13 78.2 87 48.3
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.4e-12 76.3 97 44.3
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 1.8e-12 75.9 86 47.7
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.8e-12 75.9 90 46.7
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 3.1e-12 75.1 88 45.5
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 5.3e-12 74.3 93 49.5
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 5.3e-12 74.3 91 41.8
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.9e-12 73.9 90 44.4
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 6.9e-12 73.9 72 51.4
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.9e-11 70.9 88 45.5
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.9e-10 68.6 87 44.8
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 5.0e-10 67.8 54 59.3
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 9.4e-09 63.5 153 30.1
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.6e-08 62.8 98 36.7


User provided reference genes

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