Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 3.6e-123 446.8 457 100.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 4.6e-62 243.8 210 55.2
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 3.6e-59 234.2 210 54.3
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.4e-58 232.3 182 62.6
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 3.2e-55 221.1 182 59.9
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 4.3e-52 210.7 206 49.0
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 8.1e-51 206.5 206 50.0
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.1e-50 206.1 215 47.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 4.4e-49 200.7 209 46.9
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 4.4e-49 200.7 195 49.2
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.4e-47 195.7 204 46.1
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 9.6e-44 183.0 216 44.0
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.6e-43 181.0 172 51.2
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.1e-42 179.5 171 48.0
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 2.4e-42 178.3 212 45.8
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 3.1e-42 177.9 173 48.6
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.1e-42 177.9 162 52.5
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.5e-41 175.6 174 50.0
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.5e-41 175.6 174 47.7
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 3.4e-41 174.5 198 44.9
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 3.4e-41 174.5 174 47.1
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.3e-40 172.6 143 55.9
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.3e-40 172.6 178 47.2
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 1.1e-39 169.5 166 51.8
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 4.2e-39 167.5 210 42.4
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 2.1e-38 165.2 169 45.6
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.9e-37 161.0 195 45.1
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 8.7e-37 159.8 178 47.2
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 2.5e-36 158.3 207 40.6
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 7.4e-36 156.8 180 42.8
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.1e-34 152.9 206 38.8
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.4e-34 152.5 181 43.1
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.8e-34 152.1 172 44.8
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 4.5e-33 147.5 210 39.5
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 5.8e-33 147.1 164 45.7
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.7e-32 145.6 164 42.7
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 2.7e-30 138.3 133 44.4
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 3.5e-30 137.9 148 46.6
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.3e-29 135.2 195 39.5
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 3.0e-29 134.8 179 38.0
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 3.0e-29 134.8 173 39.9
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 2.5e-28 131.7 129 48.1
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.5e-28 131.7 173 42.8
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 4.3e-28 131.0 118 50.0
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 7.4e-28 130.2 185 40.5
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 9.6e-28 129.8 166 42.8
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 1.6e-27 129.0 181 39.2
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.6e-27 129.0 158 39.9
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 2.1e-27 128.6 159 37.7
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 2.8e-27 128.3 151 43.7
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 6.2e-27 127.1 172 34.9
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 6.2e-27 127.1 123 44.7
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.8e-26 125.6 170 38.8
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 3.1e-26 124.8 140 42.9
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 4.1e-26 124.4 109 51.4
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 6.9e-26 123.6 224 37.1
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 2.0e-25 122.1 168 36.9
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.6e-25 121.7 197 35.0
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 2.6e-25 121.7 183 36.6
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.4e-25 121.3 219 37.0
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.4e-25 121.3 179 37.4
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 4.5e-25 120.9 160 38.1
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 5.8e-25 120.6 218 33.5
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.0e-24 119.8 197 34.5
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.3e-24 119.4 140 41.4
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 1.7e-24 119.0 173 37.6
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.7e-24 119.0 164 39.0
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.9e-24 118.2 177 41.2
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.9e-24 118.2 197 33.0
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.9e-24 118.2 197 33.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.9e-24 118.2 195 36.4
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 3.8e-24 117.9 196 33.7
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 3.8e-24 117.9 142 42.3
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 5.0e-24 117.5 214 32.7
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 6.5e-24 117.1 209 33.5
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.1e-23 116.3 165 35.2
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.4e-23 115.9 139 40.3
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 2.5e-23 115.2 166 35.5
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 2.5e-23 115.2 118 46.6
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 2.5e-23 115.2 154 36.4
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 7.1e-23 113.6 134 41.0
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 9.3e-23 113.2 220 30.5
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 4.6e-22 110.9 208 33.2
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 1.0e-21 109.8 211 32.7
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.0e-21 109.8 211 32.7
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.0e-21 109.8 147 39.5
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 1.3e-21 109.4 112 49.1
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 2.3e-21 108.6 185 36.8
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-20 106.3 161 36.0
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 5.7e-20 104.0 185 35.1
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.7e-20 104.0 128 37.5
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 7.4e-20 103.6 139 37.4
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 1.3e-19 102.8 166 34.9
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 4.8e-19 100.9 202 30.2
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 8.2e-19 100.1 176 36.4
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 8.2e-19 100.1 109 46.8
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.1e-18 99.8 128 36.7
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.1e-18 99.8 171 35.1
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 2.6e-17 95.1 143 36.4
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.6e-17 95.1 143 36.4
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 1.4e-15 89.4 112 42.9
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.6e-14 85.9 212 25.9
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.3e-13 82.0 123 38.2
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.7e-13 80.5 209 26.3
Lalb_Chr13g0293071 Lupinus albus HOM05D007496 ORTHO05D009479 2.4e-10 72.0 201 29.4
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 2.4e-10 72.0 163 31.3
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 3.1e-10 71.6 167 27.5
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 4.1e-10 71.2 167 31.7
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 4.1e-10 71.2 171 29.8
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 5.3e-10 70.9 150 27.3
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.2e-09 69.7 204 25.5
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.5e-09 69.3 152 25.0
MD13G1010200 Malus domestica HOM05D007496 ORTHO05D009479 4.5e-09 67.8 168 31.5
SGA_v2.0_scaffold169G38601 Striga asiatica HOM05D007496 ORTHO05D009479 4.5e-09 67.8 172 27.9
Actinidia38410 Actinidia chinensis HOM05D007496 ORTHO05D009479 5.9e-09 67.4 167 25.7
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 1.0e-08 66.6 153 27.5
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 1.3e-08 66.2 160 30.0
HPP92_012737 Vanilla planifolia HOM05D007496 ORTHO05D009479 1.3e-08 66.2 147 31.3
Haze_01569 Corylus avellana HOM05D007496 ORTHO05D009479 1.7e-08 65.9 165 29.7
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.9e-08 65.1 157 28.0
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 5.0e-08 64.3 172 29.7
PSO782G5018 Papaver somniferum HOM05D007496 ORTHO05D009479 5.0e-08 64.3 158 25.3
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 6.5e-08 63.9 172 30.8
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 6.5e-08 63.9 148 27.7
Nn1g01012 Nelumbo nucifera HOM05D007496 ORTHO05D009479 6.5e-08 63.9 161 24.8
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 8.5e-08 63.5 157 28.0
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 1.1e-07 63.2 150 29.3
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 1.1e-07 63.2 157 26.8
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 1.1e-07 63.2 157 26.8
arahy.Tifrunner.gnm1.ann1.UN0AT6 Arachis hypogaea HOM05D007496 ORTHO05D009479 1.4e-07 62.8 199 26.1
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 1.4e-07 62.8 162 27.2
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 1.4e-07 62.8 161 29.2
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 1.4e-07 62.8 157 26.8
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 1.9e-07 62.4 142 28.2
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 1.9e-07 62.4 165 26.1
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 1.9e-07 62.4 165 27.3
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 2.5e-07 62.0 152 27.6
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 2.5e-07 62.0 155 29.0
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 2.5e-07 62.0 177 24.9
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 2.5e-07 62.0 152 28.3
COL.COLO4_27514 Corchorus olitorius HOM05D007496 ORTHO05D009479 3.2e-07 61.6 211 29.4
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 3.2e-07 61.6 47 55.3
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 3.2e-07 61.6 248 24.2
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 4.2e-07 61.2 192 26.0
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 5.5e-07 60.8 142 30.3
MBI04_g09492_MAGBIO Magnolia biondii HOM05D007496 ORTHO05D009479 5.5e-07 60.8 159 27.7
Lj4g0018028 Lotus japonicus HOM05D007496 ORTHO05D009479 1.2e-06 59.7 164 28.0
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 1.2e-06 59.7 166 24.7
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 1.6e-06 59.3 173 26.6
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 1.6e-06 59.3 177 26.6
VMungo1309G1707 Vigna mungo HOM05D000424 ORTHO05D000355 1.6e-06 59.3 159 26.4
Migut.A00317 Erythranthe guttata HOM05D006287 ORTHO05D008192 2.1e-06 58.9 36 58.3
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.7e-06 58.5 35 62.9
Manes.06G022500 Manihot esculenta HOM05D003056 ORTHO05D003422 3.6e-06 58.2 177 27.7
TWI60G0667 Tripterygium wilfordii HOM05D007639 ORTHO05D009509 3.6e-06 58.2 146 32.9
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 4.7e-06 57.8 150 27.3
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 4.7e-06 57.8 173 26.6
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 4.7e-06 57.8 161 24.8
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 6.1e-06 57.4 162 25.9
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 6.1e-06 57.4 139 28.8
C04p66310 Brassica napus HOM05D000104 ORTHO05D009920 7.9e-06 57.0 171 26.3
HanXRQChr17g0536561 Helianthus annuus HOM05D008483 ORTHO05D010726 7.9e-06 57.0 159 25.2
TAR636G1662 Trochodendron aralioides HOM05D007496 ORTHO05D009479 7.9e-06 57.0 170 27.6
GSVIVG01031237001 Vitis vinifera HOM05D006888 ORTHO05D008371 7.9e-06 57.0 201 23.9


User provided reference genes

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