Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.1e-98 363.2 169 100.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 7.5e-44 181.0 149 55.7
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 9.8e-44 180.6 147 55.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.7e-43 179.9 148 56.1
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 4.8e-43 178.3 153 52.9
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 6.3e-43 177.9 153 53.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.4e-42 176.8 153 54.9
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.4e-42 176.0 151 55.6
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.4e-42 176.0 151 55.6
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 4.1e-42 175.3 150 53.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 5.4e-42 174.9 151 53.0
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 7.0e-42 174.5 152 52.6
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 7.0e-42 174.5 152 52.6
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.2e-41 173.7 152 53.3
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.2e-41 173.7 153 51.6
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 1.2e-41 173.7 144 53.5
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.6e-41 173.3 148 54.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.6e-41 173.3 148 54.1
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.6e-41 173.3 150 53.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.0e-41 172.9 150 52.7
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.7e-41 172.6 149 51.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.7e-41 172.6 154 52.6
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.5e-41 172.2 151 52.3
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 3.5e-41 172.2 144 52.8
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 4.5e-41 171.8 153 52.3
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 4.5e-41 171.8 147 51.7
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.5e-41 171.8 151 53.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 5.9e-41 171.4 148 53.4
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 5.9e-41 171.4 150 52.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 5.9e-41 171.4 151 51.7
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 7.7e-41 171.0 152 52.0
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 7.7e-41 171.0 150 52.0
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 7.7e-41 171.0 151 53.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 7.7e-41 171.0 150 52.7
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.0e-40 170.6 148 52.7
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.0e-40 170.6 170 47.1
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.3e-40 170.2 143 53.1
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.3e-40 170.2 148 53.4
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.3e-40 170.2 148 53.4
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.3e-40 170.2 148 53.4
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.7e-40 169.9 151 53.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.7e-40 169.9 153 52.3
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.7e-40 169.9 148 52.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.7e-40 169.9 147 52.4
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.3e-40 169.5 151 49.7
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.9e-40 169.1 148 52.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.9e-40 169.1 152 52.0
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.9e-40 169.1 149 51.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.9e-40 169.1 149 51.0
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.9e-40 169.1 149 51.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.9e-40 169.1 149 51.0
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.8e-40 168.7 151 51.0
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.8e-40 168.7 150 51.3
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 3.8e-40 168.7 152 51.3
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 3.8e-40 168.7 150 51.3
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.0e-40 168.3 151 51.7
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 6.6e-40 167.9 150 50.7
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 6.6e-40 167.9 151 51.0
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 8.6e-40 167.5 154 49.4
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 8.6e-40 167.5 151 50.3
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 8.6e-40 167.5 151 50.3
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.6e-40 167.5 150 49.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.6e-40 167.5 150 49.3
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.1e-39 167.2 150 50.0
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.9e-39 166.4 150 49.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.5e-39 166.0 149 53.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.5e-39 166.0 149 53.0
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.5e-39 166.0 149 53.0
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.5e-39 166.0 150 50.7
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.5e-39 166.0 150 50.0
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 3.3e-39 165.6 153 49.0
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.5e-39 164.9 149 53.0
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 5.5e-39 164.9 145 50.3
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 5.5e-39 164.9 150 52.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 5.5e-39 164.9 148 50.7
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.5e-39 164.9 154 50.0
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 7.2e-39 164.5 150 52.7
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 9.5e-39 164.1 150 50.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.2e-38 163.7 144 51.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.6e-38 163.3 145 53.1
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.6e-38 163.3 150 49.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.1e-38 162.9 146 51.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.1e-38 162.9 157 49.0
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 2.1e-38 162.9 151 50.3
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.8e-38 162.5 147 50.3
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 2.8e-38 162.5 150 50.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.6e-38 162.2 150 49.3
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 4.7e-38 161.8 152 48.0
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.7e-38 161.8 177 46.9
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.7e-38 161.8 153 48.4
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.1e-38 161.4 149 51.7
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 6.1e-38 161.4 149 49.7
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 6.1e-38 161.4 149 50.3
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 6.1e-38 161.4 166 48.8
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 8.0e-38 161.0 149 50.3
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.4e-37 160.2 152 48.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-37 159.5 150 49.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 2.3e-37 159.5 137 54.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.0e-37 159.1 150 48.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 3.0e-37 159.1 146 49.3
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 8.9e-37 157.5 148 48.6
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.2e-36 157.1 180 44.4
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.2e-36 157.1 149 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.0e-36 156.4 136 52.2
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 4.4e-36 155.2 152 46.7
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 4.4e-36 155.2 150 48.0
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 7.5e-36 154.5 154 47.4
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.3e-35 153.7 162 46.3
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.3e-35 153.7 151 47.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.7e-35 153.3 151 48.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.8e-35 152.5 146 49.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 6.3e-35 151.4 146 47.3
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.1e-34 150.6 152 44.1
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.1e-34 150.6 125 54.4
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 9.2e-34 147.5 118 55.1
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.2e-33 147.1 118 55.1
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.2e-33 147.1 118 55.1
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.0e-33 146.4 156 44.9
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.0e-32 144.1 119 54.6
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.5e-31 140.2 115 53.0
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.0e-30 134.4 137 46.0
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 8.0e-30 134.4 126 51.6
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.0e-29 134.0 152 45.4
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.8e-29 133.3 118 51.7
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-29 132.9 117 52.1
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 4.0e-29 132.1 117 51.3
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 9.8e-28 127.5 120 50.0
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.2e-27 126.3 130 44.6
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.2e-26 122.5 130 43.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.7e-25 119.4 126 44.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.5e-25 119.0 173 39.3
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.0e-24 115.9 101 52.5
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 4.7e-22 108.6 126 45.2
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 9.8e-20 100.9 117 41.0
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.2e-19 99.8 115 42.6
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 7.0e-18 94.7 52 71.2
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-17 94.0 111 40.5
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 6.0e-17 91.7 52 67.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.7e-16 90.1 52 67.3
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 3.9e-16 89.0 52 69.2
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 3.9e-16 89.0 52 69.2
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 3.9e-16 89.0 52 69.2
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 5.1e-16 88.6 52 65.4
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 6.6e-16 88.2 53 64.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.5e-15 86.3 40 80.0
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 3.3e-15 85.9 80 56.2
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 4.3e-15 85.5 75 49.3
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.6e-15 85.1 50 64.0
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.6e-15 85.1 50 64.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 9.5e-15 84.3 45 68.9
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.2e-14 84.0 79 45.6
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 4.7e-14 82.0 68 50.0
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.4e-13 80.5 71 49.3
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 2.3e-13 79.7 74 43.2
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 6.8e-13 78.2 76 43.4
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.5e-12 77.0 40 75.0
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 2.6e-12 76.3 70 50.0
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 2.6e-12 76.3 70 50.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.4e-12 75.9 47 66.0
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 4.4e-12 75.5 84 42.9
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 5.8e-12 75.1 63 47.6
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 5.8e-12 75.1 63 47.6
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.7e-11 73.6 42 66.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.7e-11 72.4 126 36.5
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 8.3e-11 71.2 79 44.3
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 4.1e-10 68.9 68 44.1
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 4.1e-10 68.9 68 44.1
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.6e-09 67.0 66 43.9
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 8.1e-06 54.7 66 37.9


User provided reference genes

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