Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 3.3e-161 571.6 280 100.0
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.2e-49 201.1 259 44.0
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 2.0e-49 200.3 289 40.8
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 5.7e-49 198.7 260 43.8
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 9.8e-49 198.0 275 42.5
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.3e-48 197.6 293 38.9
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.3e-48 197.6 259 43.2
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.7e-48 197.2 263 41.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.9e-48 196.4 248 43.5
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 3.7e-48 196.1 255 43.1
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 6.3e-48 195.3 289 40.8
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 8.3e-48 194.9 297 40.4
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 8.3e-48 194.9 295 40.3
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 8.3e-48 194.9 287 40.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.1e-47 194.5 286 40.6
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-47 194.1 299 40.8
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.4e-47 194.1 271 42.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 1.8e-47 193.7 253 43.1
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.8e-47 193.7 256 43.0
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.8e-47 193.7 255 43.1
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.8e-47 193.7 293 40.6
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.8e-47 193.7 273 41.8
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 4.1e-47 192.6 289 40.8
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 5.4e-47 192.2 273 41.8
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 7.0e-47 191.8 255 42.0
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 9.2e-47 191.4 265 42.6
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 9.2e-47 191.4 271 42.8
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.6e-46 190.7 269 41.3
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.6e-46 190.7 270 42.2
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.0e-46 190.3 262 42.4
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.7e-46 189.9 269 40.9
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 3.5e-46 189.5 267 41.9
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 3.5e-46 189.5 272 41.9
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 3.5e-46 189.5 268 40.3
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 3.5e-46 189.5 272 42.3
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.5e-46 189.5 267 39.0
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 4.6e-46 189.1 271 41.3
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.6e-46 189.1 272 42.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 4.6e-46 189.1 271 42.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.9e-46 188.7 266 41.4
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.9e-46 188.7 272 42.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 5.9e-46 188.7 276 42.4
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 5.9e-46 188.7 272 38.2
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 7.8e-46 188.3 270 41.5
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 7.8e-46 188.3 255 42.4
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.0e-45 188.0 291 39.9
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.0e-45 188.0 271 40.6
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.3e-45 187.6 271 40.6
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.7e-45 187.2 272 40.8
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.3e-45 186.8 269 40.9
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 2.3e-45 186.8 268 40.7
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.9e-45 186.4 270 40.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.9e-45 186.4 263 41.4
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 3.9e-45 186.0 272 39.0
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 3.9e-45 186.0 269 40.5
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 3.9e-45 186.0 270 41.9
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 3.9e-45 186.0 248 39.9
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 5.0e-45 185.7 264 39.8
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 6.6e-45 185.3 272 39.7
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 6.6e-45 185.3 270 42.6
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 8.6e-45 184.9 270 40.4
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 8.6e-45 184.9 269 39.8
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 8.6e-45 184.9 282 39.4
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.5e-44 184.1 277 40.4
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.5e-44 184.1 268 39.9
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.5e-44 184.1 271 38.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.5e-44 184.1 255 41.6
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.9e-44 183.7 271 38.0
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.9e-44 183.7 269 39.8
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.9e-44 183.7 276 39.5
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.5e-44 183.3 271 39.1
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.6e-44 182.2 271 37.6
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 7.3e-44 181.8 271 39.9
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.2e-43 181.0 270 41.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.2e-43 181.0 317 36.9
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.2e-43 181.0 276 39.5
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.2e-43 181.0 270 40.4
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 2.1e-43 180.3 276 38.4
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 2.8e-43 179.9 288 38.5
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 3.6e-43 179.5 270 39.6
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 3.6e-43 179.5 270 39.6
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 3.6e-43 179.5 314 37.3
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.6e-43 179.5 305 38.0
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 4.7e-43 179.1 284 39.4
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 8.0e-43 178.3 313 37.4
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 8.0e-43 178.3 257 41.6
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.8e-42 177.2 281 37.7
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 2.3e-42 176.8 252 42.5
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.3e-42 176.8 278 38.8
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.3e-42 176.8 274 40.1
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.3e-42 176.8 263 37.3
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 4.0e-42 176.0 269 38.7
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 5.2e-42 175.6 267 39.7
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 5.2e-42 175.6 252 42.5
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.8e-42 175.3 298 38.3
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 6.8e-42 175.3 292 38.0
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.5e-41 174.1 241 40.2
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.2e-40 170.2 240 39.2
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 6.4e-40 168.7 246 39.0
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 4.1e-39 166.0 254 40.9
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.1e-39 166.0 234 39.3
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 4.1e-39 166.0 238 38.2
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 7.0e-39 165.2 216 42.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.2e-38 164.5 291 37.5
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.6e-38 164.1 253 40.3
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 6.0e-38 162.2 258 36.0
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 6.6e-37 158.7 272 37.9
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.1e-36 157.9 324 33.0
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 2.5e-36 156.8 242 38.0
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.6e-35 152.9 259 35.5
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.1e-34 151.4 268 37.7
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.6e-33 146.7 246 37.0
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 9.8e-33 144.8 232 37.9
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.9e-32 143.3 214 37.9
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 6.4e-32 142.1 201 43.8
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.1e-31 141.4 245 36.7
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.7e-30 136.7 249 35.3
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 6.2e-27 125.6 270 32.2
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.2e-25 121.3 245 31.4
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 5.8e-25 119.0 180 36.7
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 7.6e-25 118.6 190 35.8
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-24 117.9 148 45.3
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.3e-24 117.9 148 45.3
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 7.1e-23 112.1 218 33.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 3.6e-19 99.8 134 44.8
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.8e-18 97.4 115 43.5
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.6e-17 93.6 118 44.9
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.7e-16 90.9 217 30.4
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-16 90.5 143 38.5
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 6.6e-13 79.0 122 37.7
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.8e-10 70.9 247 26.3
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 5.3e-10 69.3 207 27.5
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 6.9e-10 68.9 81 42.0
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.7e-08 64.3 77 41.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 9.3e-07 58.5 117 35.0
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.6e-06 57.8 68 42.6
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.6e-06 57.8 77 40.3


User provided reference genes

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