Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 5.5e-62 240.7 117 100.0
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 7.7e-48 193.7 115 78.3
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.7e-47 192.6 116 77.6
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 2.9e-47 191.8 116 76.7
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.9e-47 191.8 116 76.7
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.8e-47 191.4 116 76.7
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.8e-47 191.4 116 76.7
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 5.0e-47 191.0 114 78.1
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 5.0e-47 191.0 114 78.1
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 5.0e-47 191.0 114 78.1
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.0e-47 191.0 116 77.6
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 6.5e-47 190.7 114 78.9
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 6.5e-47 190.7 114 77.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 8.5e-47 190.3 116 75.9
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 8.5e-47 190.3 116 75.9
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 8.5e-47 190.3 115 76.5
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 8.5e-47 190.3 116 76.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.1e-46 189.9 116 76.7
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-46 189.9 116 76.7
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-46 189.9 116 76.7
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-46 189.9 116 76.7
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.1e-46 189.9 116 76.7
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.1e-46 189.9 116 76.7
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.1e-46 189.9 114 78.1
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.1e-46 189.9 114 77.2
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.5e-46 189.5 114 78.1
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 1.5e-46 189.5 115 77.4
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.5e-46 189.5 116 75.0
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.5e-46 189.5 116 75.9
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.5e-46 189.5 114 78.9
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.5e-46 189.5 116 75.9
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 1.9e-46 189.1 114 76.3
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.9e-46 189.1 114 77.2
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.9e-46 189.1 114 77.2
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.9e-46 189.1 116 75.9
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.9e-46 189.1 116 75.9
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.9e-46 189.1 116 75.9
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.9e-46 189.1 115 75.7
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.9e-46 189.1 115 75.7
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 2.5e-46 188.7 114 77.2
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.5e-46 188.7 114 77.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 2.5e-46 188.7 116 75.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 2.5e-46 188.7 116 75.9
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.5e-46 188.7 116 75.9
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.2e-46 188.3 116 75.0
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 3.2e-46 188.3 116 75.9
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 3.2e-46 188.3 116 74.1
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.2e-46 188.3 115 75.7
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.2e-46 188.3 114 77.2
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 3.2e-46 188.3 116 75.0
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 4.2e-46 188.0 114 77.2
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.2e-46 188.0 114 77.2
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 4.2e-46 188.0 116 75.0
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 5.5e-46 187.6 115 76.5
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 5.5e-46 187.6 114 77.2
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 5.5e-46 187.6 116 74.1
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.5e-46 187.6 116 74.1
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.5e-46 187.6 116 74.1
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.5e-46 187.6 116 74.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.5e-46 187.6 116 74.1
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.5e-46 187.6 116 74.1
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.5e-46 187.6 114 78.1
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 5.5e-46 187.6 116 74.1
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 5.5e-46 187.6 114 76.3
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 5.5e-46 187.6 114 76.3
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 76.3
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 76.3
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 7.2e-46 187.2 115 75.7
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 76.3
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 7.2e-46 187.2 116 75.0
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 76.3
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 76.3
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 75.4
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 76.3
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 7.2e-46 187.2 114 75.4
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 9.4e-46 186.8 114 76.3
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 9.4e-46 186.8 114 76.3
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 9.4e-46 186.8 114 77.2
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 9.4e-46 186.8 114 77.2
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 9.4e-46 186.8 116 74.1
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.2e-45 186.4 114 76.3
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-45 186.4 116 73.3
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.2e-45 186.4 116 74.1
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.2e-45 186.4 116 74.1
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.2e-45 186.4 114 75.4
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.6e-45 186.0 114 74.6
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.6e-45 186.0 114 74.6
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.6e-45 186.0 114 76.3
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.6e-45 186.0 114 76.3
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.6e-45 186.0 114 75.4
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 2.1e-45 185.7 115 74.8
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 2.1e-45 185.7 115 74.8
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 2.1e-45 185.7 115 74.8
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 2.1e-45 185.7 115 74.8
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.1e-45 185.7 115 74.8
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 2.1e-45 185.7 115 74.8
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.1e-45 185.7 114 75.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.1e-45 185.7 114 76.3
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 2.1e-45 185.7 115 74.8
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.7e-45 185.3 114 74.6
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.7e-45 185.3 114 74.6
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.7e-45 185.3 116 74.1
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 2.7e-45 185.3 114 75.4
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 2.7e-45 185.3 114 75.4
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.7e-45 185.3 114 74.6
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 3.6e-45 184.9 114 75.4
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 3.6e-45 184.9 115 74.8
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 3.6e-45 184.9 115 74.8
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.7e-45 184.5 114 74.6
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.1e-45 184.1 116 75.0
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.1e-45 184.1 116 75.0
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.1e-45 184.1 116 75.0
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 6.1e-45 184.1 116 73.3
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 6.1e-45 184.1 116 73.3
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 6.1e-45 184.1 114 74.6
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 6.1e-45 184.1 114 74.6
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 8.0e-45 183.7 114 75.4
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 8.0e-45 183.7 114 75.4
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 8.0e-45 183.7 114 75.4
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.4e-44 183.0 116 75.0
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 1.4e-44 183.0 115 74.8
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.4e-44 183.0 116 75.9
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.8e-44 182.6 115 73.0
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.8e-44 182.6 116 74.1
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.3e-44 182.2 114 75.4
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 3.0e-44 181.8 115 72.2
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 3.0e-44 181.8 114 73.7
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.2e-43 179.9 116 70.7
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.2e-43 179.9 114 74.6
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.0e-43 179.1 115 72.2
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 7.5e-43 177.2 114 71.1
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 9.8e-43 176.8 124 68.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 9.8e-43 176.8 113 72.6
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 9.8e-43 176.8 115 72.2
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 3.7e-42 174.9 117 66.7
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.1e-41 173.3 115 65.2
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 5.9e-40 167.5 115 68.7
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 2.9e-39 165.2 114 70.2
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.0e-39 164.5 114 70.2
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 5.5e-38 161.0 110 66.4
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 8.0e-37 157.1 171 50.3
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 2.3e-36 155.6 102 71.6
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.3e-31 139.8 87 73.6
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.3e-30 134.8 114 58.8
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.3e-28 129.0 80 71.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 6.8e-28 127.5 86 68.6
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 3.7e-26 121.7 75 74.7
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.9e-22 109.4 73 69.9
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.5e-22 109.0 80 65.0
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 4.3e-22 108.2 73 71.2
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 9.5e-22 107.1 68 70.6
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 3.6e-21 105.1 73 67.1
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.2e-20 101.3 71 70.4
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.2e-20 101.3 71 67.6
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.9e-20 100.5 71 67.6
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.4e-19 98.2 71 66.2
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 2.7e-16 89.0 85 57.6
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.7e-15 86.3 51 76.5
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.6e-13 78.6 42 81.0
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.2e-11 73.6 46 71.7
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 3.2e-09 65.5 39 71.8


User provided reference genes

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