Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 9.1e-120 434.5 410 100.0
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 9.4e-16 89.0 200 32.0
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 2.1e-15 87.8 143 35.0
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.0e-14 85.5 181 30.9
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.0e-14 85.5 185 31.9
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.0e-14 84.0 187 31.6
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 3.9e-14 83.6 187 33.2
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 5.1e-14 83.2 185 33.0
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 5.1e-14 83.2 183 31.1
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 8.8e-14 82.4 180 33.3
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 1.1e-13 82.0 186 33.3
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.5e-13 81.6 140 37.9
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.5e-13 81.6 178 32.0
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.0e-13 81.3 187 32.1
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 2.0e-13 81.3 180 33.3
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 2.6e-13 80.9 178 32.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 2.6e-13 80.9 138 33.3
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 2.6e-13 80.9 187 31.6
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 4.4e-13 80.1 180 33.3
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 4.4e-13 80.1 178 29.8
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 4.4e-13 80.1 178 30.9
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 4.4e-13 80.1 179 33.0
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 4.4e-13 80.1 182 30.8
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 5.7e-13 79.7 178 30.3
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 5.7e-13 79.7 181 30.4
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 5.7e-13 79.7 178 31.5
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 5.7e-13 79.7 187 31.6
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 5.7e-13 79.7 185 30.8
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 5.7e-13 79.7 185 29.2
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 7.4e-13 79.3 174 30.5
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 7.4e-13 79.3 179 31.3
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.3e-12 78.6 140 37.1
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 1.3e-12 78.6 187 29.9
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.3e-12 78.6 185 30.8
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 1.3e-12 78.6 185 30.3
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 1.3e-12 78.6 170 28.2
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.3e-12 78.6 185 28.6
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 2.2e-12 77.8 142 38.7
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 2.2e-12 77.8 181 30.9
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 2.2e-12 77.8 186 32.8
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.2e-12 77.8 158 34.8
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 2.2e-12 77.8 138 34.1
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 2.2e-12 77.8 139 33.8
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 2.2e-12 77.8 140 32.9
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 2.8e-12 77.4 171 30.4
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 2.8e-12 77.4 172 31.4
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 2.8e-12 77.4 186 29.6
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 2.8e-12 77.4 186 29.6
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 2.8e-12 77.4 176 32.4
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 2.8e-12 77.4 182 29.7
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 2.8e-12 77.4 213 28.2
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.8e-12 77.4 189 30.7
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.8e-12 77.4 198 31.3
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 3.7e-12 77.0 156 30.8
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 4.8e-12 76.6 140 35.0
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 4.8e-12 76.6 140 35.0
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 4.8e-12 76.6 178 28.7
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 4.8e-12 76.6 185 28.1
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.3e-12 76.3 138 32.6
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 6.3e-12 76.3 185 30.3
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 6.3e-12 76.3 185 29.2
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 6.3e-12 76.3 139 33.8
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 6.3e-12 76.3 180 31.1
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 6.3e-12 76.3 181 30.9
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 6.3e-12 76.3 181 30.4
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 6.3e-12 76.3 157 31.2
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 6.3e-12 76.3 179 35.8
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 6.3e-12 76.3 178 29.2
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 8.2e-12 75.9 187 29.4
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 8.2e-12 75.9 187 29.4
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 8.2e-12 75.9 178 30.9
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 8.2e-12 75.9 178 30.3
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 8.2e-12 75.9 182 33.0
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 8.2e-12 75.9 139 36.7
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 8.2e-12 75.9 185 29.2
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-11 75.5 140 34.3
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 1.1e-11 75.5 140 34.3
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.1e-11 75.5 138 31.9
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.1e-11 75.5 190 30.0
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.4e-11 75.1 181 29.8
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.8e-11 74.7 181 28.7
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.8e-11 74.7 140 33.6
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 1.8e-11 74.7 184 29.9
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.8e-11 74.7 178 30.3
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 1.8e-11 74.7 185 28.6
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 2.4e-11 74.3 187 28.3
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.4e-11 74.3 138 32.6
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 3.1e-11 73.9 196 27.6
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 3.1e-11 73.9 179 29.6
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 3.1e-11 73.9 140 33.6
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 4.1e-11 73.6 182 29.7
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 4.1e-11 73.6 185 28.6
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 5.3e-11 73.2 138 32.6
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 5.3e-11 73.2 184 28.8
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 5.3e-11 73.2 180 30.6
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 5.3e-11 73.2 179 31.3
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 5.3e-11 73.2 186 30.1
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 7.0e-11 72.8 185 28.6
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 7.0e-11 72.8 178 28.1
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.2e-10 72.0 197 27.9
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.2e-10 72.0 181 30.9
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.6e-10 71.6 178 28.7
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.6e-10 71.6 179 29.6
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.6e-10 71.6 187 31.0
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 2.0e-10 71.2 181 29.8
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 3.5e-10 70.5 156 34.0
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 4.5e-10 70.1 153 33.3
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 4.5e-10 70.1 196 29.6
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 7.7e-10 69.3 186 29.6
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 7.7e-10 69.3 183 30.1
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.2e-09 67.8 150 30.7
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.2e-09 67.8 172 29.1
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 6.5e-09 66.2 180 25.6
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 1.1e-08 65.5 179 29.1
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.9e-08 64.7 129 31.8
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 1.2e-07 62.0 188 29.3
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 3.6e-07 60.5 171 26.9
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.8e-06 58.2 173 27.2
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 1.8e-06 58.2 174 29.3
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 4.0e-06 57.0 198 26.8
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 5.2e-06 56.6 179 26.8


User provided reference genes

Program Settings