Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.3e-74 282.3 164 100.0
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 8.9e-26 120.9 119 49.6
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.2e-25 120.6 119 50.4
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 2.0e-25 119.8 119 49.6
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.4e-25 119.0 118 49.2
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.4e-25 119.0 119 49.6
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 3.4e-25 119.0 120 48.3
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 4.4e-25 118.6 118 49.2
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.4e-25 118.6 118 49.2
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 5.8e-25 118.2 119 48.7
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 5.8e-25 118.2 119 48.7
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 7.5e-25 117.9 119 48.7
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 9.9e-25 117.5 126 47.6
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 9.9e-25 117.5 119 48.7
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 9.9e-25 117.5 119 49.6
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.3e-24 117.1 119 47.9
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.3e-24 117.1 118 47.5
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.7e-24 116.7 119 48.7
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.7e-24 116.7 119 47.9
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 2.2e-24 116.3 120 47.5
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.2e-24 116.3 119 48.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.2e-24 116.3 119 48.7
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.9e-24 115.9 120 48.3
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 2.9e-24 115.9 126 45.2
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 46.7
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 46.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 46.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 46.7
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 46.7
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 46.7
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 48.3
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 4.9e-24 115.2 120 49.2
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 6.4e-24 114.8 118 45.8
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 6.4e-24 114.8 120 48.3
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 6.4e-24 114.8 119 48.7
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.1e-23 114.0 119 47.9
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.1e-23 114.0 125 44.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.1e-23 114.0 125 44.0
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.4e-23 113.6 120 45.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.4e-23 113.6 120 47.5
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.4e-23 113.6 130 43.8
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.4e-23 113.6 120 48.3
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.4e-23 113.6 120 48.3
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.9e-23 113.2 121 47.9
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.9e-23 113.2 126 46.8
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 3.2e-23 112.5 120 47.5
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.2e-23 112.5 121 46.3
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 4.1e-23 112.1 120 47.5
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 4.1e-23 112.1 120 47.5
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 4.1e-23 112.1 120 47.5
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 5.4e-23 111.7 120 46.7
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 5.4e-23 111.7 120 45.8
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 5.4e-23 111.7 120 47.5
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 5.4e-23 111.7 120 47.5
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 7.1e-23 111.3 121 46.3
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 7.1e-23 111.3 120 45.0
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 7.1e-23 111.3 121 47.1
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 7.1e-23 111.3 121 46.3
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 9.2e-23 110.9 121 46.3
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 9.2e-23 110.9 119 47.1
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 9.2e-23 110.9 125 45.6
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.2e-22 110.5 119 46.2
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.2e-22 110.5 122 45.9
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.2e-22 110.5 119 46.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.1e-22 109.8 119 46.2
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.1e-22 109.8 120 46.7
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.1e-22 109.8 119 47.1
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.7e-22 109.4 121 44.6
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.7e-22 109.4 120 45.0
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.5e-22 109.0 120 47.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 3.5e-22 109.0 121 43.8
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.5e-22 109.0 121 46.3
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 4.6e-22 108.6 120 46.7
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 4.6e-22 108.6 121 46.3
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.6e-22 108.6 120 45.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.6e-22 108.6 120 45.0
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 6.0e-22 108.2 120 46.7
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.0e-21 107.5 121 45.5
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.0e-21 107.5 120 43.3
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 1.3e-21 107.1 120 46.7
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.7e-21 106.7 119 44.5
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.3e-21 106.3 121 43.8
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 2.3e-21 106.3 121 45.5
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 2.3e-21 106.3 121 45.5
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.0e-21 105.9 120 44.2
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.0e-21 105.9 121 43.0
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.0e-21 105.9 122 46.7
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.9e-21 105.5 121 45.5
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.9e-21 105.5 121 45.5
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.9e-21 105.5 121 45.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.9e-21 105.5 121 45.5
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 5.1e-21 105.1 121 44.6
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 6.6e-21 104.8 121 44.6
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 6.6e-21 104.8 121 43.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.6e-21 104.4 121 44.6
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.1e-20 104.0 120 45.0
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.5e-20 103.6 121 43.0
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.9e-20 103.2 121 43.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.9e-20 103.2 122 41.8
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.5e-20 102.8 115 45.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.5e-20 102.8 119 46.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 3.3e-20 102.4 121 43.0
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 4.3e-20 102.1 118 40.7
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 5.6e-20 101.7 116 44.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 7.3e-20 101.3 121 43.8
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.2e-19 100.5 121 43.8
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.6e-19 100.1 119 42.0
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.1e-19 99.8 120 41.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-19 99.8 127 43.3
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 4.7e-19 98.6 110 46.4
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 6.2e-19 98.2 113 45.1
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 6.2e-19 98.2 114 43.9
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 8.1e-19 97.8 129 41.1
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 3.1e-18 95.9 99 46.5
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.0e-18 95.5 140 40.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 4.0e-18 95.5 102 47.1
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 4.0e-18 95.5 102 47.1
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 6.8e-18 94.7 119 38.7
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 6.8e-18 94.7 90 46.7
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.5e-17 93.6 123 40.7
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.0e-17 93.2 116 43.1
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.4e-17 92.4 150 38.0
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.4e-17 92.4 123 40.7
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 5.8e-17 91.7 113 42.5
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 7.6e-17 91.3 101 43.6
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.6e-17 91.3 127 39.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 4.9e-16 88.6 100 45.0
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 8.4e-16 87.8 109 40.4
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 3.2e-15 85.9 86 47.7
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.4e-15 85.1 101 41.6
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.4e-15 85.1 101 41.6
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 5.4e-15 85.1 120 40.0
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.1e-15 84.7 119 41.2
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.1e-15 84.7 119 41.2
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.1e-15 84.7 119 41.2
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.6e-14 83.6 118 40.7
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.1e-14 83.2 102 42.2
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.1e-14 83.2 125 37.6
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.1e-14 83.2 176 31.8
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 7.8e-14 81.3 101 40.6
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.8e-14 81.3 107 40.2
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.3e-13 80.5 77 48.1
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 5.1e-13 78.6 102 40.2
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 2.5e-12 76.3 102 40.2
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 3.3e-12 75.9 132 35.6
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 4.3e-12 75.5 91 42.9
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 9.6e-12 74.3 123 37.4
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 4.7e-11 72.0 92 42.4
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 9.9e-09 64.3 76 40.8
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 2.2e-08 63.2 76 40.8
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 4.9e-08 62.0 76 40.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.1e-07 60.8 147 28.6
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.1e-07 60.8 72 36.1
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.4e-07 60.5 75 44.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.6e-06 57.0 44 56.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.6e-06 57.0 59 45.8
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 2.1e-06 56.6 63 44.4
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 2.7e-06 56.2 47 55.3
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.6e-06 55.5 90 34.4
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 6.0e-06 55.1 44 52.3


User provided reference genes

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