Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25585 Corylus avellana HOM05D004952 ORTHO05D006131 2.2e-48 195.3 98 100.0
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 1.2e-22 109.8 64 85.9
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 1.3e-19 99.8 61 73.8
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 3.7e-19 98.2 63 77.8
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 8.2e-19 97.1 64 78.1
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 2.4e-18 95.5 62 75.8
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.2e-17 93.2 62 74.2
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 1.2e-17 93.2 47 95.7
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 1.2e-17 93.2 64 70.3
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.6e-17 92.8 62 74.2
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.6e-17 92.8 62 74.2
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 5.9e-17 90.9 59 74.6
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 7.7e-17 90.5 63 71.4
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 1.0e-16 90.1 63 71.4
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.0e-16 90.1 62 71.0
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 1.3e-16 89.7 63 73.0
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 1.7e-16 89.4 62 71.0
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 1.7e-16 89.4 63 71.4
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 2.9e-16 88.6 63 69.8
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 3.8e-16 88.2 50 84.0
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 5.0e-16 87.8 62 69.4
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 5.0e-16 87.8 62 67.7
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 6.5e-16 87.4 63 69.8
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 6.5e-16 87.4 62 69.4
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 6.5e-16 87.4 84 54.8
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 8.5e-16 87.0 61 67.2
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 1.1e-15 86.7 45 88.9
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.9e-15 85.9 61 62.3
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.9e-15 85.9 61 62.3
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 1.9e-15 85.9 64 67.2
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 2.5e-15 85.5 63 68.3
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 3.2e-15 85.1 62 64.5
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 3.2e-15 85.1 62 71.0
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 3.2e-15 85.1 63 68.3
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 4.2e-15 84.7 62 59.7
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 4.2e-15 84.7 62 62.9
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 4.2e-15 84.7 64 62.5
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 4.2e-15 84.7 62 64.5
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 5.5e-15 84.3 63 66.7
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 7.2e-15 84.0 64 68.8
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 9.4e-15 83.6 62 66.1
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 9.4e-15 83.6 64 67.2
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 9.4e-15 83.6 63 61.9
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 2.1e-14 82.4 61 65.6
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 2.1e-14 82.4 63 61.9
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 2.7e-14 82.0 62 59.7
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 2.7e-14 82.0 62 67.7
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 2.7e-14 82.0 62 67.7
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 2.7e-14 82.0 63 61.9
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 3.6e-14 81.6 63 65.1
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 3.6e-14 81.6 58 72.4
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 4.7e-14 81.3 59 66.1
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 1.8e-13 79.3 64 64.1
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 1.8e-13 79.3 62 59.7
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 2.3e-13 79.0 62 61.3
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 2.3e-13 79.0 64 64.1
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 2.3e-13 79.0 63 57.1
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 3.0e-13 78.6 62 61.3
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 3.0e-13 78.6 63 63.5
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 5.2e-13 77.8 61 62.3
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 5.2e-13 77.8 63 58.7
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 8.8e-13 77.0 61 65.6
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 8.8e-13 77.0 59 61.0
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 8.8e-13 77.0 62 56.5
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 8.8e-13 77.0 47 76.6
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 2.0e-12 75.9 61 63.9
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 3.4e-12 75.1 59 66.1
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 4.4e-12 74.7 63 60.3
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 4.4e-12 74.7 61 63.9
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 5.7e-12 74.3 57 68.4
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 9.8e-12 73.6 82 47.6
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 1.7e-11 72.8 61 62.3
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 2.8e-11 72.0 82 46.3
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 4.8e-11 71.2 60 56.7
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 8.3e-11 70.5 65 52.3
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 1.1e-10 70.1 89 46.1
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 1.1e-10 70.1 63 61.9
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 1.1e-10 70.1 57 61.4
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 1.8e-10 69.3 63 57.1
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 4.1e-10 68.2 65 55.4
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 7.0e-10 67.4 63 52.4
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 9.1e-10 67.0 47 66.0
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 5.9e-09 64.3 66 51.5
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.0e-08 63.5 62 48.4
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.0e-08 63.5 47 68.1
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.3e-08 63.2 47 68.1
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 1.1e-07 60.1 44 61.4
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 1.9e-07 59.3 55 52.7
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.2e-07 58.2 58 46.6
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 9.4e-07 57.0 62 50.0
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.2e-06 56.6 58 53.4
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 6.1e-06 54.3 86 40.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 6.1e-06 54.3 86 40.7
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 8.0e-06 53.9 58 44.8


User provided reference genes

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