Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25413 Corylus avellana HOM05D000921 ORTHO05D002852 1.7e-177 625.9 322 100.0
Haze_16736 Corylus avellana HOM05D000921 ORTHO05D002852 1.5e-157 559.7 367 82.0
CiPaw.02G165500 Carya illinoinensis HOM05D000921 ORTHO05D002852 3.7e-124 448.7 372 68.0
QL08p051741 Quercus lobata HOM05D000921 ORTHO05D002852 1.3e-121 440.3 373 66.8
Prupe.2G149000 Prunus persica HOM05D000921 ORTHO05D002852 1.4e-112 410.2 376 61.2
CANSAT56G4522 Cannabis sativa HOM05D000921 ORTHO05D002852 3.2e-112 409.1 365 62.2
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 1.6e-111 406.8 368 61.7
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 1.7e-108 396.7 374 60.4
Ciclev10024213m.g Citrus clementina HOM05D000921 ORTHO05D002852 2.2e-108 396.4 346 65.0
Atru.chr5.339 Acer truncatum HOM05D000921 ORTHO05D002852 1.4e-107 393.7 357 62.5
Thecc.01G372900 Theobroma cacao HOM05D000921 ORTHO05D002852 1.8e-107 393.3 369 59.9
RcHm_v2.0_Chr1g0351141 Rosa chinensis HOM05D000921 ORTHO05D002852 3.8e-105 385.6 371 59.0
COL.COLO4_12586 Corchorus olitorius HOM05D000921 ORTHO05D002852 9.4e-104 380.9 361 59.0
Cpa.g.sc18.152 Carica papaya HOM05D000921 ORTHO05D002852 3.6e-103 379.0 374 57.2
CSS0003914 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D002852 4.7e-103 378.6 366 59.8
TWI14G1087 Tripterygium wilfordii HOM05D000921 ORTHO05D002852 1.8e-102 376.7 384 60.4
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 5.1e-102 375.2 366 60.4
FAN06G4917 Fragaria x ananassa HOM05D000921 ORTHO05D002852 1.1e-101 374.0 400 55.0
FvH4_7g12350 Fragaria vesca HOM05D000921 ORTHO05D002852 1.5e-101 373.6 400 54.8
FAN03G0226 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.0e-101 373.2 400 54.8
FAN06G2098 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.0e-101 373.2 400 54.8
FAN10G3046 Fragaria x ananassa HOM05D000921 ORTHO05D002852 5.7e-101 371.7 400 54.5
FAN10G3969 Fragaria x ananassa HOM05D000921 ORTHO05D002852 5.7e-101 371.7 400 54.2
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 7.4e-101 371.3 358 57.8
Manes.05G043300 Manihot esculenta HOM05D000921 ORTHO05D002852 3.7e-100 369.0 362 58.3
VMungo1383G3256 Vigna mungo HOM05D000921 ORTHO05D002852 4.8e-100 368.6 366 58.2
FAN01G1835 Fragaria x ananassa HOM05D000921 ORTHO05D002852 6.3e-100 368.2 400 54.0
Rhsim07G0024100 Rhododendron simsii HOM05D000921 ORTHO05D002852 8.2e-100 367.9 369 58.3
Potri.002G150000 Populus trichocarpa HOM05D000921 ORTHO05D002852 1.4e-99 367.1 372 59.4
vmacro13368 Vaccinium macrocarpon HOM05D000921 ORTHO05D002852 5.3e-99 365.2 369 58.3
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 9.1e-99 364.4 367 57.5
Glyma.09G267100 Glycine max HOM05D000921 ORTHO05D002852 2.0e-98 363.2 365 58.4
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 2.6e-98 362.8 358 57.3
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.5e-98 362.1 358 57.0
Glyma.18G223300 Glycine max HOM05D000921 ORTHO05D002852 7.7e-98 361.3 365 57.3
CsaV3_3G009490 Cucumis sativus L. HOM05D000921 ORTHO05D002852 1.3e-97 360.5 369 58.0
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.3e-97 360.5 350 57.1
Potri.014G072600 Populus trichocarpa HOM05D000921 ORTHO05D002852 1.3e-97 360.5 375 57.6
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 2.9e-97 359.4 367 56.9
Lalb_Chr01g0021281 Lupinus albus HOM05D000921 ORTHO05D002852 8.5e-97 357.8 367 56.4
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 2.5e-96 356.3 350 56.6
Phvul.008G074600 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 3.2e-96 355.9 365 56.2
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 7.2e-96 354.8 350 55.7
LjContig00136g0027596 Lotus japonicus HOM05D000921 ORTHO05D002852 9.4e-96 354.4 365 55.9
Ca_23823_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 1.2e-95 354.0 359 56.3
Ca_23828_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 1.2e-95 354.0 359 56.3
Lalb_Chr07g0189591 Lupinus albus HOM05D000921 ORTHO05D002852 6.1e-95 351.7 372 55.6
Lj3g0001885 Lotus japonicus HOM05D000921 ORTHO05D002852 1.4e-94 350.5 336 60.4
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 1.8e-94 350.1 359 56.3
Sed0001143 Sechium edule HOM05D000921 ORTHO05D002852 5.2e-94 348.6 370 56.2
Sabra02G0118700 Salix brachista HOM05D000921 ORTHO05D002852 1.7e-92 343.6 322 61.2
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 2.2e-92 343.2 366 54.6
Sed0009254 Sechium edule HOM05D000921 ORTHO05D002852 1.1e-91 340.9 365 54.8
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 3.1e-91 339.3 301 61.8
Lj9A573G74 Lonicera japonica HOM05D000921 ORTHO05D002852 3.1e-91 339.3 355 56.3
TPR.G28298 Trifolium pratense HOM05D000921 ORTHO05D002852 3.1e-91 339.3 363 55.1
Psat4g150320 Pisum sativum HOM05D000921 ORTHO05D002852 4.1e-91 339.0 368 55.7
TAR629G2419 Trochodendron aralioides HOM05D000921 ORTHO05D002852 2.2e-89 333.2 387 54.0
TAR629G0908 Trochodendron aralioides HOM05D000921 ORTHO05D002852 3.8e-89 332.4 387 53.7
arahy.Tifrunner.gnm1.ann1.FVGU3J Arachis hypogaea HOM05D000921 ORTHO05D002852 1.1e-88 330.9 360 55.3
arahy.Tifrunner.gnm1.ann1.UYJG1L Arachis hypogaea HOM05D000921 ORTHO05D002852 1.1e-88 330.9 360 55.0
Peaxi162Scf00416g00039 Petunia axillaris HOM05D000921 ORTHO05D002852 1.0e-86 324.3 317 55.8
SGA_v2.0_scaffold303G47875 Striga asiatica HOM05D000921 ORTHO05D002852 1.0e-86 324.3 368 53.5
Phvul.010G049000 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 1.4e-86 323.9 366 54.1
CAN.G1561.16 Capsicum annuum HOM05D000921 ORTHO05D002852 1.8e-86 323.6 324 57.4
Sabra14G0051800 Salix brachista HOM05D000921 ORTHO05D002852 4.0e-86 322.4 373 55.0
Migut.F01430 Erythranthe guttata HOM05D000921 ORTHO05D002852 5.2e-86 322.0 370 52.7
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 1.5e-85 320.5 371 52.0
Gohir.D08G149700 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.4e-85 318.9 216 70.8
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 5.7e-85 318.5 367 54.0
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.7e-84 317.0 216 70.4
DCAR_025120 Daucus carota HOM05D000921 ORTHO05D002852 2.8e-84 316.2 375 51.5
Medtr8g035750 Medicago truncatula HOM05D000921 ORTHO05D002852 2.8e-84 316.2 349 54.2
Aqoxy7G00539 Aquilegia oxysepala HOM05D000921 ORTHO05D002852 3.7e-84 315.8 367 52.3
HanXRQChr04g0122231 Helianthus annuus HOM05D000921 ORTHO05D002852 3.7e-84 315.8 363 52.6
Sopen01g037870 Solanum pennellii HOM05D000921 ORTHO05D002852 6.3e-84 315.1 311 57.6
Nitab4.5_0002436g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 1.1e-83 314.3 328 54.9
Nn1g01159 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.4e-83 313.9 382 51.0
VMungo0331G0475 Vigna mungo HOM05D000921 ORTHO05D002852 1.8e-83 313.5 322 56.2
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 5.4e-83 312.0 368 52.4
THA.LOC104827617 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 7.0e-83 311.6 369 49.6
Solyc01g094050.1 Solanum lycopersicum HOM05D000921 ORTHO05D002852 2.7e-82 309.7 311 56.9
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 3.5e-82 309.3 374 50.8
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.7e-81 307.0 332 54.8
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 1.2e-79 300.8 325 56.0
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 1.2e-79 300.8 365 51.5
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 2.7e-79 299.7 372 51.3
AT2G45540 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 8.0e-79 298.1 334 53.0
Sc02g0002400 Simmondsia chinensis HOM05D000921 ORTHO05D002852 1.0e-78 297.7 256 61.7
Lsat_1_v5_gn_7_7601 Lactuca sativa HOM05D000921 ORTHO05D002852 3.0e-78 296.2 322 53.7
Carub.0005s2767 Capsella rubella HOM05D000921 ORTHO05D002852 1.5e-77 293.9 267 59.9
Nitab4.5_0005340g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 1.5e-77 293.9 308 55.5
ECA236G3038 Erigeron canadensis HOM05D000921 ORTHO05D002852 5.7e-77 292.0 367 49.3
Thhalv10001277m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 2.2e-76 290.0 370 49.5
Aa31LG1G27030 Aethionema arabicum HOM05D000921 ORTHO05D002852 8.3e-76 288.1 373 47.2
AUR62004245 Chenopodium quinoa HOM05D000921 ORTHO05D002852 8.3e-76 288.1 355 50.4
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 2.7e-74 283.1 323 52.3
Thhalv10005733m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 3.5e-74 282.7 213 70.4
SHI13503 Sapria himalayana HOM05D000921 ORTHO05D002852 3.5e-74 282.7 258 59.3
AUR62013602 Chenopodium quinoa HOM05D000921 ORTHO05D002852 4.5e-74 282.3 354 49.7
MBI12_g38016_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 5.9e-74 282.0 228 64.5
Carub.0004s2816 Capsella rubella HOM05D000921 ORTHO05D002852 1.3e-73 280.8 374 47.1
THA.LOC104801996 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 2.3e-73 280.0 342 51.2
EL10Ac1g00924 Beta vulgaris HOM05D000921 ORTHO05D002852 8.6e-73 278.1 359 50.7
AL937U10010 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 4.3e-72 275.8 202 68.8
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 5.6e-72 275.4 323 50.8
Sp5g02330 Schrenkiella parvula HOM05D000921 ORTHO05D002852 1.0e-70 271.2 326 51.2
Aa31LG10G15130 Aethionema arabicum HOM05D000921 ORTHO05D002852 5.2e-70 268.9 353 48.4
MBI04_g43159_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 1.2e-69 267.7 370 45.9
C04p31670 Brassica napus HOM05D000921 ORTHO05D002852 9.8e-69 264.6 318 50.0
BolC4t24715H Brassica oleracea HOM05D000921 ORTHO05D002852 9.8e-69 264.6 318 50.0
BcaC02g10197 Brassica carinata HOM05D000921 ORTHO05D002852 1.3e-68 264.2 318 49.7
BcaC07g42651 Brassica carinata HOM05D000921 ORTHO05D002852 2.2e-68 263.5 196 68.4
CARHR171310 Cardamine hirsuta HOM05D000921 ORTHO05D002852 2.9e-68 263.1 263 54.8
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 8.3e-68 261.5 291 51.9
BolC8t51174H Brassica oleracea HOM05D000921 ORTHO05D002852 4.1e-67 259.2 317 49.2
Oeu003495.3 Olea europaea HOM05D000921 ORTHO05D002852 4.1e-67 259.2 173 74.0
BcaC07g40611 Brassica carinata HOM05D000921 ORTHO05D002852 5.4e-67 258.8 317 48.9
BcaC07g42649 Brassica carinata HOM05D000921 ORTHO05D002852 5.4e-67 258.8 318 49.4
A09p53140 Brassica napus HOM05D000921 ORTHO05D002852 5.4e-67 258.8 317 48.6
C08p35860 Brassica napus HOM05D000921 ORTHO05D002852 5.4e-67 258.8 317 48.9
BraA09t40739Z Brassica rapa HOM05D000921 ORTHO05D002852 5.4e-67 258.8 317 48.6
AL5G43240 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 1.6e-66 257.3 330 50.0
ECA240G3430 Erigeron canadensis HOM05D000921 ORTHO05D002852 3.5e-66 256.1 199 58.3
A05p05550 Brassica napus HOM05D000921 ORTHO05D002852 1.6e-63 247.3 304 48.7
Lsat_1_v5_gn_3_135480 Lactuca sativa HOM05D000921 ORTHO05D002852 1.0e-62 244.6 202 57.4
CDE11G1134 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 4.0e-62 242.7 294 49.3
BraA05t19525Z Brassica rapa HOM05D000921 ORTHO05D002852 2.0e-61 240.4 305 48.5
Dinv43732 Davidia involucrata HOM05D000921 ORTHO05D002852 2.0e-61 240.4 134 85.1
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 4.4e-61 239.2 201 56.7
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 7.5e-61 238.4 310 48.7
BolC4t22272H Brassica oleracea HOM05D000921 ORTHO05D002852 7.5e-61 238.4 310 48.7
AL4G44720 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 1.3e-57 227.6 310 47.4
ATR0757G054 Amborella trichopoda HOM05D000921 ORTHO05D002852 9.8e-53 211.5 287 44.3
HPP92_009978 Vanilla planifolia HOM05D000921 ORTHO05D002852 1.0e-49 201.4 224 52.2
C08p35910 Brassica napus HOM05D000921 ORTHO05D002852 2.1e-47 193.7 252 48.8
HPP92_003358 Vanilla planifolia HOM05D000921 ORTHO05D002852 7.6e-45 185.3 202 51.0
SMO347G0262 Selaginella moellendorffii HOM05D000921 ORTHO05D002852 7.1e-43 178.7 207 48.3
Actinidia31441 Actinidia chinensis HOM05D000921 ORTHO05D002852 1.6e-42 177.6 189 58.2
SEGI_07876 Sequoiadendron giganteum HOM05D000921 ORTHO05D002852 6.6e-41 172.2 326 37.7
Mapoly0056s0137 Marchantia polymorpha HOM05D000921 ORTHO05D002852 1.5e-37 161.0 201 44.3
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 2.9e-36 156.8 90 84.4
Pp3c8_11180 Physcomitrium patens HOM05D000921 ORTHO05D002852 4.9e-36 156.0 247 38.9
Os02g0663300 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 1.4e-35 154.5 209 44.5
unitig_22.g5372 Utricularia gibba HOM05D000921 ORTHO05D002852 1.2e-34 151.4 261 40.6
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 2.1e-34 150.6 251 41.4
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 4.6e-34 149.4 184 49.5
Actinidia31440 Actinidia chinensis HOM05D000921 ORTHO05D002852 3.0e-33 146.7 90 76.7
Pp3c16_14330 Physcomitrium patens HOM05D000921 ORTHO05D002852 3.9e-33 146.4 197 43.7
Pp3c25_6190 Physcomitrium patens HOM05D000921 ORTHO05D002852 1.5e-32 144.4 263 35.7
AagrBONN_evm.TU.Sc2ySwM_117.767 Anthoceros agrestis HOM05D000921 ORTHO05D002852 2.8e-31 140.2 369 33.6
CBR_g26195 Chara braunii HOM05D000921 ORTHO05D002852 1.8e-30 137.5 253 38.3
VMungo1080G0771 Vigna mungo HOM05D000921 ORTHO05D002852 2.7e-26 123.6 77 72.7
Os04g0555600 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 1.3e-23 114.8 109 56.9
unitig_22.g5373 Utricularia gibba HOM05D000921 ORTHO05D002852 3.5e-10 70.1 45 57.8
TAR636G1461 Trochodendron aralioides HOM05D000921 ORTHO05D002852 1.3e-07 61.6 42 71.4


User provided reference genes

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