Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 7.2e-226 786.9 408 100.0
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 1.7e-158 563.1 411 76.6
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 1.3e-134 483.8 406 66.0
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 1.9e-133 479.9 408 65.7
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 1.1e-130 470.7 410 65.1
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 1.9e-130 469.9 411 64.5
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 2.2e-129 466.5 408 63.5
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 2.8e-129 466.1 407 64.6
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 3.7e-129 465.7 411 64.2
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 1.4e-128 463.8 411 64.2
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 2.4e-128 463.0 391 66.0
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 5.3e-128 461.8 409 62.6
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 9.0e-128 461.1 391 65.5
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 1.5e-127 460.3 408 63.7
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 2.6e-127 459.5 405 64.0
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 2.6e-127 459.5 409 62.1
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 3.4e-127 459.1 408 63.5
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 7.7e-127 458.0 412 63.6
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 7.7e-127 458.0 406 64.3
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 1.3e-126 457.2 393 65.4
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 1.3e-126 457.2 407 63.6
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 2.2e-126 456.4 407 63.4
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 2.9e-126 456.1 407 63.4
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 3.8e-126 455.7 410 63.7
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 6.5e-126 454.9 408 63.0
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 8.5e-126 454.5 405 64.4
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 1.4e-125 453.8 406 62.6
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 1.9e-125 453.4 411 62.5
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 4.2e-125 452.2 410 63.4
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 4.2e-125 452.2 404 63.1
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 5.5e-125 451.8 404 62.9
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 5.5e-125 451.8 401 63.1
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 1.2e-124 450.7 391 65.0
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 1.2e-124 450.7 404 62.9
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 2.7e-124 449.5 408 62.5
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 7.9e-124 448.0 407 61.9
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 7.9e-124 448.0 405 63.2
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 3.9e-123 445.7 409 61.9
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 3.9e-123 445.7 405 62.0
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 5.1e-123 445.3 411 62.0
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 1.5e-122 443.7 412 61.4
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 3.3e-122 442.6 407 61.4
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 5.7e-122 441.8 408 61.3
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 5.7e-122 441.8 405 61.7
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 5.7e-122 441.8 399 63.2
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 5.7e-122 441.8 450 57.8
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 5.7e-122 441.8 408 60.5
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 7.4e-122 441.4 407 62.2
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 3.7e-121 439.1 394 63.2
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 4.8e-121 438.7 406 61.8
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 8.2e-121 438.0 411 62.5
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 1.4e-120 437.2 401 61.3
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 2.4e-120 436.4 411 59.9
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 3.1e-120 436.0 411 61.3
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 4.1e-120 435.6 411 59.9
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 1.2e-119 434.1 399 60.9
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 2.0e-119 433.3 414 60.4
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 2.6e-119 433.0 391 61.6
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 3.4e-119 432.6 408 59.8
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 4.5e-119 432.2 391 62.1
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 4.5e-119 432.2 391 62.1
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 1.0e-118 431.0 391 61.6
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 1.3e-118 430.6 409 59.7
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 2.2e-118 429.9 406 59.4
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 2.2e-118 429.9 399 60.9
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 1.9e-117 426.8 398 61.3
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 3.2e-117 426.0 406 59.1
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 4.2e-117 425.6 411 61.1
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 4.2e-117 425.6 389 62.5
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 5.5e-117 425.2 405 60.7
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 9.4e-117 424.5 399 61.2
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 9.4e-117 424.5 402 58.0
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 2.1e-116 423.3 399 60.9
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 2.1e-116 423.3 389 62.5
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 6.1e-116 421.8 389 62.2
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 7.9e-116 421.4 401 60.3
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 7.9e-116 421.4 398 60.8
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 1.0e-115 421.0 411 60.6
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 1.0e-115 421.0 411 60.6
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.0e-115 421.0 401 60.6
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 2.3e-115 419.9 399 61.2
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 2.3e-115 419.9 399 61.2
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 2.3e-115 419.9 399 61.2
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 3.9e-115 419.1 389 61.2
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 6.7e-115 418.3 389 62.2
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 6.7e-115 418.3 399 59.9
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 3.3e-114 416.0 401 60.1
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 3.3e-114 416.0 401 60.1
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 3.3e-114 416.0 410 58.5
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 5.7e-114 415.2 407 59.0
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 2.2e-113 413.3 397 59.7
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 4.8e-113 412.1 391 58.1
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 8.2e-113 411.4 391 60.9
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 1.8e-112 410.2 405 56.5
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 4.1e-112 409.1 363 61.4
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 7.7e-111 404.8 409 58.2
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 1.3e-110 404.1 404 56.4
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 6.5e-110 401.7 368 60.9
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 4.7e-108 395.6 355 62.0
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 3.9e-107 392.5 486 50.0
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 8.8e-107 391.3 406 56.9
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 2.2e-105 386.7 407 56.0
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 3.7e-105 386.0 247 79.4
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 4.8e-105 385.6 248 79.8
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 6.3e-105 385.2 401 54.9
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 8.2e-105 384.8 248 79.0
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 1.1e-104 384.4 406 53.7
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 2.4e-104 383.3 391 56.3
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 6.5e-102 375.2 369 59.1
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 2.5e-101 373.2 248 78.2
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 7.2e-101 371.7 375 57.3
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 4.7e-100 369.0 356 58.7
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 1.5e-98 364.0 359 57.9
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 8.5e-94 348.2 243 73.7
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 5.7e-90 335.5 393 50.4
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 2.3e-86 323.6 382 50.8
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 2.2e-81 307.0 390 49.0
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 6.3e-81 305.4 384 47.7
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 3.6e-68 263.1 330 48.5
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 2.5e-61 240.4 384 40.9
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 1.7e-54 217.6 133 80.5
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 5.2e-51 206.1 250 48.8
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 2.9e-49 200.3 388 38.1
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 1.7e-46 191.0 271 43.9
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 3.3e-45 186.8 116 78.4
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 4.2e-40 169.9 311 37.9
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 2.7e-39 167.2 115 69.6
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 3.0e-38 163.7 126 70.6
CAN.G151.30 Capsicum annuum HOM05D005837 ORTHO05D007594 2.9e-33 147.1 93 81.7
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 7.1e-32 142.5 117 61.5
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 5.1e-30 136.3 402 31.1
vmacro18602 Vaccinium macrocarpon HOM05D005837 ORTHO05D024186 4.6e-23 113.2 77 76.6
Cc07_g15210 Coffea canephora HOM05D005837 ORTHO05D024186 2.5e-16 90.9 54 79.6
COL.COLO4_30268 Corchorus olitorius HOM05D005837 ORTHO05D161296 4.2e-08 63.5 123 37.4
BolC2t11972H Brassica oleracea HOM05D005837 ORTHO05D024186 7.2e-08 62.8 49 63.3
VMungo0647G0536 Vigna mungo HOM05D000266 ORTHO05D000819 5.1e-06 56.6 135 29.6


User provided reference genes

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