Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24874 Corylus avellana HOM05D001149 ORTHO05D000970 5.3e-39 164.5 123 100.0
Haze_24883 Corylus avellana HOM05D001149 ORTHO05D000970 2.6e-38 162.2 123 99.2
Cfa002625 Carpinus fangiana HOM05D001149 ORTHO05D000970 7.9e-35 150.6 124 95.2
CiPaw.03G143800 Carya illinoinensis HOM05D001149 ORTHO05D000970 5.5e-20 101.3 127 44.1
CiPaw.04G102600 Carya illinoinensis HOM05D001149 ORTHO05D000970 2.1e-19 99.4 95 49.5
DCAR_014212 Daucus carota HOM05D001149 ORTHO05D000970 3.0e-18 95.5 89 52.8
Dinv13213 Davidia involucrata HOM05D001149 ORTHO05D000970 1.9e-17 92.8 90 50.0
Ciclev10027218m.g Citrus clementina HOM05D001149 ORTHO05D000970 7.4e-17 90.9 87 51.7
Actinidia28242 Actinidia chinensis HOM05D001149 ORTHO05D000970 1.3e-16 90.1 88 50.0
ClCG01G018670 Citrullus lanatus HOM05D001149 ORTHO05D000970 2.8e-16 89.0 87 46.0
Hma1.2p1_0190F.1_g082940 Hydrangea macrophylla HOM05D001149 ORTHO05D000970 2.8e-16 89.0 90 47.8
Manes.12G132000 Manihot esculenta HOM05D001149 ORTHO05D000970 2.8e-16 89.0 85 50.6
MSTRG.2574 Avicennia marina HOM05D001149 ORTHO05D000970 3.7e-16 88.6 86 48.8
Eucgr.H04752 Eucalyptus grandis HOM05D001149 ORTHO05D000970 4.8e-16 88.2 86 50.0
MELO3C007746.2 Cucumis melo HOM05D001149 ORTHO05D000970 6.3e-16 87.8 87 44.8
CsaV3_6G045330 Cucumis sativus L. HOM05D001149 ORTHO05D000970 1.1e-15 87.0 87 44.8
Nn1g05412 Nelumbo nucifera HOM05D001149 ORTHO05D000970 1.1e-15 87.0 84 51.2
Sed0000325 Sechium edule HOM05D001149 ORTHO05D000970 1.1e-15 87.0 86 47.7
FAN23G1124 Fragaria x ananassa HOM05D001149 ORTHO05D000970 1.4e-15 86.7 85 48.2
FAN26G0813 Fragaria x ananassa HOM05D001149 ORTHO05D000970 1.4e-15 86.7 85 48.2
Prupe.6G190800 Prunus persica HOM05D001149 ORTHO05D000970 1.4e-15 86.7 90 50.0
QL06p048536 Quercus lobata HOM05D001149 ORTHO05D000970 1.4e-15 86.7 89 48.3
Thecc.01G098100 Theobroma cacao HOM05D001149 ORTHO05D000970 1.8e-15 86.3 89 49.4
TAR625G1361 Trochodendron aralioides HOM05D001149 ORTHO05D000970 1.8e-15 86.3 87 46.0
FAN19G0956 Fragaria x ananassa HOM05D001149 ORTHO05D000970 2.4e-15 85.9 85 48.2
Gohir.A02G128600 Gossypium hirsutum HOM05D001149 ORTHO05D000970 2.4e-15 85.9 89 48.3
Gohir.D03G039300 Gossypium hirsutum HOM05D001149 ORTHO05D000970 2.4e-15 85.9 89 48.3
RcHm_v2.0_Chr2g0112781 Rosa chinensis HOM05D001149 ORTHO05D000970 2.4e-15 85.9 85 48.2
Duzib187G1316 Durio zibethinus HOM05D001149 ORTHO05D000970 4.1e-15 85.1 82 52.4
MD15G1322000 Malus domestica HOM05D001149 ORTHO05D000970 4.1e-15 85.1 85 49.4
FAN28G1489 Fragaria x ananassa HOM05D001149 ORTHO05D000970 5.3e-15 84.7 85 47.1
Glyma.08G134100 Glycine max HOM05D001149 ORTHO05D000970 6.9e-15 84.3 96 45.8
Phvul.002G257600 Phaseolus vulgaris HOM05D001149 ORTHO05D000970 6.9e-15 84.3 96 45.8
HanXRQChr15g0469381 Helianthus annuus HOM05D001149 ORTHO05D000970 9.1e-15 84.0 86 48.8
SalBow3G1625 Salvia bowleyana HOM05D001149 ORTHO05D000970 9.1e-15 84.0 85 49.4
Gorai.003G040500 Gossypium raimondii HOM05D001149 ORTHO05D000970 1.2e-14 83.6 89 47.2
MD01G1033300 Malus domestica HOM05D001149 ORTHO05D000970 1.2e-14 83.6 90 47.8
Peaxi162Scf00295g01127 Petunia axillaris HOM05D001149 ORTHO05D000970 1.2e-14 83.6 84 48.8
CSS0028693 Camellia sinensis var. sinensis HOM05D001149 ORTHO05D000970 1.5e-14 83.2 83 48.2
Glyma.05G176700 Glycine max HOM05D001149 ORTHO05D000970 1.5e-14 83.2 88 46.6
MBI02_g02170_MAGBIO Magnolia biondii HOM05D001149 ORTHO05D000970 1.5e-14 83.2 86 46.5
Potri.007G095400 Populus trichocarpa HOM05D001149 ORTHO05D000970 1.5e-14 83.2 87 49.4
Rhsim08G0012500 Rhododendron simsii HOM05D001149 ORTHO05D000970 2.6e-14 82.4 85 47.1
Lj4g0022683 Lotus japonicus HOM05D001149 ORTHO05D000970 4.5e-14 81.6 89 44.9
Sabra07G0078600 Salix brachista HOM05D001149 ORTHO05D000970 4.5e-14 81.6 88 48.9
Solyc11g009040.3 Solanum lycopersicum HOM05D001149 ORTHO05D000970 4.5e-14 81.6 91 45.1
MBI05_g34725_MAGBIO Magnolia biondii HOM05D001149 ORTHO05D000970 5.9e-14 81.3 90 45.6
Potri.005G073700 Populus trichocarpa HOM05D001149 ORTHO05D000970 5.9e-14 81.3 89 44.9
SGA_v2.0_scaffold111G31505 Striga asiatica HOM05D001149 ORTHO05D000970 5.9e-14 81.3 89 46.1
Cc07_g14860 Coffea canephora HOM05D001149 ORTHO05D000970 7.7e-14 80.9 92 45.7
Gohir.A11G203600 Gossypium hirsutum HOM05D001149 ORTHO05D000970 7.7e-14 80.9 90 47.8
Gohir.D11G220000 Gossypium hirsutum HOM05D001149 ORTHO05D000970 7.7e-14 80.9 90 47.8
Gorai.007G236300 Gossypium raimondii HOM05D001149 ORTHO05D000970 7.7e-14 80.9 90 47.8
TWI74G0420 Tripterygium wilfordii HOM05D001149 ORTHO05D000970 7.7e-14 80.9 87 46.0
Sed0017228 Sechium edule HOM05D001149 ORTHO05D000970 1.3e-13 80.1 88 42.0
Ca_17752_v3 Cicer arietinum L. HOM05D001149 ORTHO05D000970 1.7e-13 79.7 88 45.5
Actinidia28855 Actinidia chinensis HOM05D001149 ORTHO05D000970 2.2e-13 79.3 88 44.3
vmacro18588 Vaccinium macrocarpon HOM05D001149 ORTHO05D000970 2.2e-13 79.3 89 46.1
unitig_736.g22350 Utricularia gibba HOM05D001149 ORTHO05D000970 2.9e-13 79.0 88 45.5
Lalb_Chr07g0185261 Lupinus albus HOM05D001149 ORTHO05D000970 3.8e-13 78.6 91 42.9
Psat5g090560 Pisum sativum HOM05D001149 ORTHO05D000970 3.8e-13 78.6 90 43.3
Sabra05G0060200 Salix brachista HOM05D001149 ORTHO05D000970 5.0e-13 78.2 84 44.0
TWI53G1981 Tripterygium wilfordii HOM05D001149 ORTHO05D000970 6.5e-13 77.8 85 44.7
Cpa.g.sc55.91 Carica papaya HOM05D001149 ORTHO05D000970 8.5e-13 77.4 98 42.9
Medtr3g087020 Medicago truncatula HOM05D001149 ORTHO05D000970 8.5e-13 77.4 85 45.9
PGR102G2054 Punica granatum HOM05D001149 ORTHO05D000970 1.1e-12 77.0 88 42.0
TWI77G0463 Tripterygium wilfordii HOM05D001149 ORTHO05D000970 1.1e-12 77.0 88 45.5
Sc03g0000050 Simmondsia chinensis HOM05D001149 ORTHO05D000970 1.4e-12 76.6 86 45.3
PGSC0003DMG400016161 Solanum tuberosum HOM05D001149 ORTHO05D000970 1.9e-12 76.3 84 45.2
PGSC0003DMG400016799 Solanum tuberosum HOM05D001149 ORTHO05D000970 1.9e-12 76.3 91 44.0
TPR.G6240 Trifolium pratense HOM05D001149 ORTHO05D000970 1.9e-12 76.3 85 44.7
CAN.G151.17 Capsicum annuum HOM05D001149 ORTHO05D000970 2.5e-12 75.9 91 44.0
Sopen11g004810 Solanum pennellii HOM05D001149 ORTHO05D000970 2.5e-12 75.9 84 44.0
arahy.Tifrunner.gnm1.ann1.Z3I63Q Arachis hypogaea HOM05D001149 ORTHO05D000970 3.2e-12 75.5 84 44.0
Migut.L00146 Erythranthe guttata HOM05D001149 ORTHO05D000970 3.2e-12 75.5 86 47.7
Medtr8g090010 Medicago truncatula HOM05D001149 ORTHO05D000970 3.2e-12 75.5 85 43.5
Phvul.001G253101 Phaseolus vulgaris HOM05D001149 ORTHO05D000970 3.2e-12 75.5 84 41.7
Nn5g30064 Nelumbo nucifera HOM05D001149 ORTHO05D000970 4.2e-12 75.1 85 44.7
SalBow5G5405 Salvia bowleyana HOM05D001149 ORTHO05D000970 4.2e-12 75.1 90 44.4
Duzib264G0507 Durio zibethinus HOM05D001149 ORTHO05D000970 1.2e-11 73.6 94 42.6
Migut.H02347 Erythranthe guttata HOM05D001149 ORTHO05D000970 1.2e-11 73.6 91 41.8
Lsat_1_v5_gn_5_34461 Lactuca sativa HOM05D001149 ORTHO05D000970 1.2e-11 73.6 75 49.3
SGA_v2.0_scaffold115G32182 Striga asiatica HOM05D001149 ORTHO05D000970 1.2e-11 73.6 77 48.1
THA.LOC104798884 Tarenaya hassleriana HOM05D001149 ORTHO05D000970 3.6e-11 72.0 87 43.7
THA.LOC104801672 Tarenaya hassleriana HOM05D001149 ORTHO05D000970 7.9e-11 70.9 84 42.9
DCAR_003495 Daucus carota HOM05D001149 ORTHO05D000970 1.0e-10 70.5 85 52.9
Glyma.18G015900 Glycine max HOM05D001149 ORTHO05D000970 1.0e-10 70.5 81 44.4
PGR031G3721 Punica granatum HOM05D001149 ORTHO05D000970 1.0e-10 70.5 84 40.5
TPR.G16001 Trifolium pratense HOM05D001149 ORTHO05D000970 1.0e-10 70.5 87 40.2
Aqoxy6G00752 Aquilegia oxysepala HOM05D001149 ORTHO05D000970 1.4e-10 70.1 84 42.9
VMungo1383G0952 Vigna mungo HOM05D001149 ORTHO05D000970 1.8e-10 69.7 79 41.8
Aa31LG3G16840 Aethionema arabicum HOM05D001149 ORTHO05D000970 3.9e-10 68.6 89 41.6
Glyma.11G241100 Glycine max HOM05D001149 ORTHO05D000970 3.9e-10 68.6 82 41.5
ATR0782G101 Amborella trichopoda HOM05D001149 ORTHO05D000970 8.8e-10 67.4 79 40.5
Hund16301 Selenicereus undatus HOM05D001149 ORTHO05D000970 8.8e-10 67.4 87 40.2
unitig_736.g22574 Utricularia gibba HOM05D001149 ORTHO05D000970 1.1e-09 67.0 81 40.7
Os02g0756100 Oryza sativa ssp. japonica HOM05D001149 ORTHO05D000970 2.0e-09 66.2 79 51.9
CARHR202990 Cardamine hirsuta HOM05D001149 ORTHO05D000970 2.6e-09 65.9 88 38.6
unitig_899.g14548 Utricularia gibba HOM05D001149 ORTHO05D000970 2.6e-09 65.9 79 41.8
AL6G20810 Arabidopsis lyrata HOM05D001149 ORTHO05D000970 3.3e-09 65.5 91 38.5
Carub.0006s0877 Capsella rubella HOM05D001149 ORTHO05D000970 3.3e-09 65.5 90 38.9
AT5G10310 Arabidopsis thaliana HOM05D001149 ORTHO05D000970 4.4e-09 65.1 90 38.9
Thhalv10015039m.g Eutrema salsugineum HOM05D001149 ORTHO05D000970 4.4e-09 65.1 91 38.5
Sp6g33120 Schrenkiella parvula HOM05D001149 ORTHO05D000970 7.4e-09 64.3 91 38.5
HPP92_004282 Vanilla planifolia HOM05D001149 ORTHO05D000970 9.7e-09 63.9 80 40.0
BcaB08g37119 Brassica carinata HOM05D001149 ORTHO05D000970 1.3e-08 63.5 91 38.5
A10p27270 Brassica napus HOM05D001149 ORTHO05D000970 1.3e-08 63.5 91 38.5
C09p67080 Brassica napus HOM05D001149 ORTHO05D000970 1.3e-08 63.5 91 38.5
BraA10t44777Z Brassica rapa HOM05D001149 ORTHO05D000970 1.3e-08 63.5 91 38.5
PSO541G2242 Papaver somniferum HOM05D001149 ORTHO05D000970 2.2e-08 62.8 104 37.5
PSO781G0026 Papaver somniferum HOM05D001149 ORTHO05D000970 3.7e-08 62.0 96 37.5
Lj6g0013605 Lotus japonicus HOM05D001149 ORTHO05D000970 4.8e-08 61.6 85 35.3
SEGI_34139 Sequoiadendron giganteum HOM05D001149 ORTHO05D000970 4.8e-08 61.6 79 36.7
Solyc05g051545.1 Solanum lycopersicum HOM05D001149 ORTHO05D000970 4.8e-08 61.6 80 40.0
BcaC04g19313 Brassica carinata HOM05D001149 ORTHO05D000970 6.3e-08 61.2 89 38.2
BolC9t59481H Brassica oleracea HOM05D001149 ORTHO05D000970 6.3e-08 61.2 89 38.2
HPP92_011218 Vanilla planifolia HOM05D001149 ORTHO05D000970 1.1e-07 60.5 86 38.4
Sopen05g029990 Solanum pennellii HOM05D001149 ORTHO05D000970 1.4e-07 60.1 80 38.8
Zm00001eb194040 Zea mays HOM05D001149 ORTHO05D000970 1.4e-07 60.1 79 38.0
BcaB05g21475 Brassica carinata HOM05D001149 ORTHO05D000970 1.8e-07 59.7 88 38.6
BraA02t05027Z Brassica rapa HOM05D001149 ORTHO05D000970 3.1e-07 58.9 98 36.7
A02p00430 Brassica napus HOM05D001149 ORTHO05D000970 5.3e-07 58.2 98 36.7
SMO343G0137 Selaginella moellendorffii HOM05D001149 ORTHO05D000970 5.3e-07 58.2 73 41.1
SMO228G0182 Selaginella moellendorffii HOM05D001149 ORTHO05D000970 7.0e-07 57.8 89 36.0
TPR.G12333 Trifolium pratense HOM05D001149 ORTHO05D000970 1.5e-06 56.6 81 33.3
BcaB05g21474 Brassica carinata HOM05D001149 ORTHO05D000970 2.0e-06 56.2 87 40.2
BcaB05g21478 Brassica carinata HOM05D001149 ORTHO05D000970 2.0e-06 56.2 87 40.2
C02p04370 Brassica napus HOM05D001149 ORTHO05D000970 2.0e-06 56.2 87 40.2
Atru.chr13.905 Acer truncatum HOM05D001149 ORTHO05D000970 2.6e-06 55.8 72 36.1
BolC2t06401H Brassica oleracea HOM05D001149 ORTHO05D000970 2.6e-06 55.8 81 40.7
HPP92_016359 Vanilla planifolia HOM05D001149 ORTHO05D000970 2.6e-06 55.8 105 35.2
Ciclev10027128m.g Citrus clementina HOM05D001149 ORTHO05D000970 3.4e-06 55.5 86 37.2
Cpa.g.sc160.16 Carica papaya HOM05D001149 ORTHO05D000970 4.5e-06 55.1 72 31.9
Eucgr.I00658 Eucalyptus grandis HOM05D001149 ORTHO05D000970 4.5e-06 55.1 75 36.0
SMO364G0861 Selaginella moellendorffii HOM05D001149 ORTHO05D000970 5.9e-06 54.7 86 36.0
Medtr3g110550 Medicago truncatula HOM05D001149 ORTHO05D000970 7.7e-06 54.3 90 33.3
PSO541G4201 Papaver somniferum HOM05D001149 ORTHO05D000970 7.7e-06 54.3 85 30.6
Psat5g019920 Pisum sativum HOM05D001149 ORTHO05D000970 7.7e-06 54.3 85 34.1


User provided reference genes

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