Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001149', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001149' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001149' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001149' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001149' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001149', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001149' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001149' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001149' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001149' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001149', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001149' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001149' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001149' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001149' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001149', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001149' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001149', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '540', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' ) ), 'genes' => array( 'A01p01220' => 'bna', 'A02p00430' => 'bna', 'A03p38530' => 'bna', 'A08p22840' => 'bna', 'A10p27270' => 'bna', 'Aa31LG3G16840' => 'aar', 'Aa31LG6G14710' => 'aar', 'Actinidia10243' => 'ach', 'Actinidia11947' => 'ach', 'Actinidia19278' => 'ach', 'Actinidia21771' => 'ach', 'Actinidia26048' => 'ach', 'Actinidia28242' => 'ach', 'Actinidia28855' => 'ach', 'Actinidia36406' => 'ach', 'Actinidia38455' => 'ach', 'Actinidia39102' => 'ach', 'AL3G26070' => 'aly', 'AL6G20810' => 'aly', 'AL7G12860' => 'aly', 'Aqoxy6G00752' => 'aox', 'Aqoxy6G01533' => 'aox', 'Aqoxy7G01180' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6IQ4J1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LL7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBMC25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KF8IRP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8VS4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE721R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RUC2T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNXD21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50H5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3I63Q' => 'arhy', 'AT3G13898' => 'ath', 'AT4G37810' => 'ath', 'AT5G10310' => 'ath', 'ATR0629G008' => 'atr', 'ATR0782G101' => 'atr', 'ATR0789G080' => 'atr', 'Atru.chr1.3785' => 'acertr', 'Atru.chr13.905' => 'acertr', 'Atru.chr3.1084' => 'acertr', 'Atru.chr7.1623' => 'acertr', 'AUR62001518' => 'cqu', 'AUR62007968' => 'cqu', 'AUR62009850' => 'cqu', 'BcaB04g18810' => 'bca', 'BcaB04g20971' => 'bca', 'BcaB05g21473' => 'bca', 'BcaB05g21474' => 'bca', 'BcaB05g21475' => 'bca', 'BcaB05g21478' => 'bca', 'BcaB08g37119' => 'bca', 'BcaC01g00376' => 'bca', 'BcaC01g03968' => 'bca', 'BcaC03g13306' => 'bca', 'BcaC04g19313' => 'bca', 'BcaC09g48380' => 'bca', 'BcaNung06298' => 'bca', 'BolC1t00136H' => 'bol', 'BolC1t05019H' => 'bol', 'BolC2t06401H' => 'bol', 'BolC3t16929H' => 'bol', 'BolC3t20145H' => 'bol', 'BolC9t59481H' => 'bol', 'BraA01t00121Z' => 'bra', 'BraA02t05027Z' => 'bra', 'BraA03t13000Z' => 'bra', 'BraA08t34248Z' => 'bra', 'BraA10t44777Z' => 'bra', 'C01p01380' => 'bna', 'C01p50700' => 'bna', 'C02p04370' => 'bna', 'C03p46660' => 'bna', 'C03p79050' => 'bna', 'C09p67080' => 'bna', 'CAN.G151.17' => 'can', 'CAN.G416.45' => 'can', 'CANSAT01G1908' => 'cansat', 'CANSAT56G0624' => 'cansat', 'CANSAT56G2554' => 'cansat', 'CANSAT56G3109' => 'cansat', 'CARHR088700' => 'chi', 'CARHR202990' => 'chi', 'CARHR246200' => 'chi', 'Carub.0003s1346' => 'cru', 'Carub.0006s0877' => 'cru', 'Carub.0007s0243' => 'cru', 'Ca_17752_v3' => 'car', 'Cc04_g01730' => 'ccan', 'Cc07_g07570' => 'ccan', 'Cc07_g14860' => 'ccan', 'Cc10_g07910' => 'ccan', 'CDE01G0391' => 'cde', 'CDE02G0871' => 'cde', 'CDE07G0845' => 'cde', 'Cfa002625' => 'cfa', 'Cfa003060' => 'cfa', 'Cfa003562' => 'cfa', 'Cfa013395' => 'cfa', 'Ciclev10003474m.g' => 'ccl', 'Ciclev10026765m.g' => 'ccl', 'Ciclev10027128m.g' => 'ccl', 'Ciclev10027218m.g' => 'ccl', 'CiPaw.01G223000' => 'cil', 'CiPaw.02G138600' => 'cil', 'CiPaw.03G143800' => 'cil', 'CiPaw.03G212800' => 'cil', 'CiPaw.04G102600' => 'cil', 'CiPaw.07G039100' => 'cil', 'CiPaw.08G028100' => 'cil', 'CiPaw.08G148300' => 'cil', 'ClCG01G017930' => 'cla', 'ClCG01G018670' => 'cla', 'ClCG07G013920' => 'cla', 'ClCG08G012010' => 'cla', 'COL.COLO4_11642' => 'col', 'COL.COLO4_18179' => 'col', 'COL.COLO4_30682' => 'col', 'COL.COLO4_35369' => 'col', 'Cpa.g.sc129.50' => 'cpa', 'Cpa.g.sc160.16' => 'cpa', 'Cpa.g.sc25.73' => 'cpa', 'Cpa.g.sc55.91' => 'cpa', 'CsaV3_2G030600' => 'csa', 'CsaV3_3G043680' => 'csa', 'CsaV3_6G044450' => 'csa', 'CsaV3_6G045330' => 'csa', 'CSS0007214' => 'camsi', 'CSS0010734' => 'camsi', 'CSS0028693' => 'camsi', 'CSS0037670' => 'camsi', 'CSS0038979' => 'camsi', 'CSS0042759' => 'camsi', 'DCAR_003495' => 'dca', 'DCAR_010779' => 'dca', 'DCAR_014212' => 'dca', 'DCAR_016142' => 'dca', 'DCAR_025836' => 'dca', 'DCAR_026392' => 'dca', 'DCAR_028269' => 'dca', 'DCAR_028608' => 'dca', 'Dinv01224' => 'din', 'Dinv13213' => 'din', 'Dinv23066' => 'din', 'Dinv26977' => 'din', 'Dinv36784' => 'din', 'Dinv37897' => 'din', 'Duzib041G0175' => 'dzi', 'Duzib093G1310' => 'dzi', 'Duzib116G0552' => 'dzi', 'Duzib147G0342' => 'dzi', 'Duzib150G0496' => 'dzi', 'Duzib168G0869' => 'dzi', 'Duzib187G1316' => 'dzi', 'Duzib235G0544' => 'dzi', 'Duzib264G0209' => 'dzi', 'Duzib264G0507' => 'dzi', 'ECA232G1532' => 'eca', 'ECA234G4346' => 'eca', 'ECA240G0567' => 'eca', 'ECA247G0223' => 'eca', 'ECA247G4079' => 'eca', 'EL10Ac1g02332' => 'bvu', 'Eucgr.C00867' => 'egr', 'Eucgr.F00110' => 'egr', 'Eucgr.H04752' => 'egr', 'Eucgr.I00658' => 'egr', 'FAN09G3542' => 'fan', 'FAN15G0497' => 'fan', 'FAN19G0956' => 'fan', 'FAN19G1803' => 'fan', 'FAN19G2210' => 'fan', 'FAN20G0718' => 'fan', 'FAN23G0806' => 'fan', 'FAN23G1124' => 'fan', 'FAN23G3014' => 'fan', 'FAN26G0397' => 'fan', 'FAN26G0813' => 'fan', 'FAN26G1984' => 'fan', 'FAN26G3251' => 'fan', 'FAN27G0032' => 'fan', 'FAN28G0061' => 'fan', 'FAN28G0326' => 'fan', 'FAN28G1489' => 'fan', 'FvH4_1g07850' => 'fve', 'FvH4_1g18570' => 'fve', 'FvH4_1g20560' => 'fve', 'FvH4_2g35090' => 'fve', 'FvH4_4g20843' => 'fve', 'FvH4_6g33980' => 'fve', 'Glyma.01G196900' => 'gma', 'Glyma.04G087500' => 'gma', 'Glyma.05G109900' => 'gma', 'Glyma.05G176700' => 'gma', 'Glyma.06G089200' => 'gma', 'Glyma.07G008100' => 'gma', 'Glyma.08G134100' => 'gma', 'Glyma.08G190900' => 'gma', 'Glyma.09G065100' => 'gma', 'Glyma.11G044700' => 'gma', 'Glyma.11G241100' => 'gma', 'Glyma.13G348600' => 'gma', 'Glyma.15G025200' => 'gma', 'Glyma.17G157200' => 'gma', 'Glyma.18G015900' => 'gma', 'Gohir.A02G128600' => 'ghi', 'Gohir.A02G148201' => 'ghi', 'Gohir.A05G030900' => 'ghi', 'Gohir.A05G136000' => 'ghi', 'Gohir.A05G213600' => 'ghi', 'Gohir.A06G027400' => 'ghi', 'Gohir.A06G073566' => 'ghi', 'Gohir.A10G057900' => 'ghi', 'Gohir.A11G049400' => 'ghi', 'Gohir.A11G203600' => 'ghi', 'Gohir.A11G210800' => 'ghi', 'Gohir.A12G081600' => 'ghi', 'Gohir.D03G032250' => 'ghi', 'Gohir.D03G039300' => 'ghi', 'Gohir.D05G032300' => 'ghi', 'Gohir.D05G138000' => 'ghi', 'Gohir.D05G217000' => 'ghi', 'Gohir.D06G024800' => 'ghi', 'Gohir.D10G059700' => 'ghi', 'Gohir.D11G052900' => 'ghi', 'Gohir.D11G212300' => 'ghi', 'Gohir.D11G220000' => 'ghi', 'Gohir.D12G078200' => 'ghi', 'Gorai.003G033800' => 'gra', 'Gorai.003G040500' => 'gra', 'Gorai.007G057500' => 'gra', 'Gorai.007G228200' => 'gra', 'Gorai.007G236300' => 'gra', 'Gorai.008G087000' => 'gra', 'Gorai.009G032500' => 'gra', 'Gorai.009G142400' => 'gra', 'Gorai.009G223800' => 'gra', 'Gorai.010G029200' => 'gra', 'Gorai.010G084400' => 'gra', 'Gorai.011G063700' => 'gra', 'GSVIVG01006628001' => 'vvi', 'GSVIVG01009270001' => 'vvi', 'GSVIVG01015177001' => 'vvi', 'GSVIVG01016803001' => 'vvi', 'HanXRQChr02g0031761' => 'han', 'HanXRQChr03g0060311' => 'han', 'HanXRQChr09g0238021' => 'han', 'HanXRQChr09g0253861' => 'han', 'HanXRQChr10g0312391' => 'han', 'HanXRQChr11g0323831' => 'han', 'HanXRQChr15g0469381' => 'han', 'HanXRQChr15g0485481' => 'han', 'HanXRQChr17g0567671' => 'han', 'Haze_03963' => 'cav', 'Haze_15984' => 'cav', 'Haze_21938' => 'cav', 'Haze_24874' => 'cav', 'Haze_24883' => 'cav', 'Haze_25935' => 'cav', 'Hma1.2p1_0190F.1_g082940' => 'hma', 'Hma1.2p1_0477F.1_g160980' => 'hma', 'Hma1.2p1_1078F.1_g254795' => 'hma', 'Hma1.2p1_1128F.1_g259750' => 'hma', 'Hma1.2p1_1953F.1_g308825' => 'hma', 'HPP92_003980' => 'vpl', 'HPP92_004282' => 'vpl', 'HPP92_011218' => 'vpl', 'HPP92_014016' => 'vpl', 'HPP92_016359' => 'vpl', 'HPP92_017691' => 'vpl', 'HPP92_027716' => 'vpl', 'Hund13602' => 'sun', 'Hund14155' => 'sun', 'Hund16301' => 'sun', 'Hund20824' => 'sun', 'Lalb_Chr05g0213871' => 'lal', 'Lalb_Chr07g0185261' => 'lal', 'Lalb_Chr08g0242841' => 'lal', 'Lalb_Chr09g0323781' => 'lal', 'Lalb_Chr09g0329361' => 'lal', 'Lalb_Chr11g0064631' => 'lal', 'Lalb_Chr12g0203921' => 'lal', 'Lalb_Chr14g0372741' => 'lal', 'Lalb_Chr16g0379051' => 'lal', 'Lalb_Chr16g0385881' => 'lal', 'Lalb_Chr22g0351861' => 'lal', 'Lalb_Chr23g0269791' => 'lal', 'Lalb_Chr25g0280841' => 'lal', 'Lj1g0001272' => 'lja', 'Lj2g0026128' => 'lja', 'Lj3g0008632' => 'lja', 'Lj3g0025342' => 'lja', 'Lj4A169T36' => 'lonja', 'Lj4C78T4' => 'lonja', 'Lj4g0006639' => 'lja', 'Lj4g0022683' => 'lja', 'Lj5A41T72' => 'lonja', 'Lj6g0013492' => 'lja', 'Lj6g0013605' => 'lja', 'Lsat_1_v5_gn_1_35720' => 'lsa', 'Lsat_1_v5_gn_4_159020' => 'lsa', 'Lsat_1_v5_gn_5_135480' => 'lsa', 'Lsat_1_v5_gn_5_34461' => 'lsa', 'Lsat_1_v5_gn_7_34200' => 'lsa', 'Manes.04G141000' => 'mes', 'Manes.11G024300' => 'mes', 'Manes.12G118900' => 'mes', 'Manes.12G132000' => 'mes', 'Manes.13G095400' => 'mes', 'Manes.13G106900' => 'mes', 'Manes.16G100300' => 'mes', 'Manes.18G052100' => 'mes', 'Mapoly0020s0157' => 'mpo', 'Mapoly0069s0003' => 'mpo', 'MBI02_g02170_MAGBIO' => 'mbi', 'MBI04_g36911_MAGBIO' => 'mbi', 'MBI05_g34725_MAGBIO' => 'mbi', 'MBI16_g05027_MAGBIO' => 'mbi', 'MBI16_g31807_MAGBIO' => 'mbi', 'MD01G1033300' => 'mdo', 'MD02G1193400' => 'mdo', 'MD08G1108300' => 'mdo', 'MD09G1190400' => 'mdo', 'MD15G1088900' => 'mdo', 'MD15G1322000' => 'mdo', 'Medtr2g039920' => 'mtr', 'Medtr2g099810' => 'mtr', 'Medtr3g087020' => 'mtr', 'Medtr3g110550' => 'mtr', 'Medtr4g097720' => 'mtr', 'Medtr5g014840' => 'mtr', 'Medtr8g017850' => 'mtr', 'Medtr8g090010' => 'mtr', 'MELO3C007667.2' => 'cme', 'MELO3C007746.2' => 'cme', 'MELO3C011120.2' => 'cme', 'MELO3C013075.2' => 'cme', 'Migut.C00429' => 'egut', 'Migut.D00959' => 'egut', 'Migut.H02347' => 'egut', 'Migut.I01039' => 'egut', 'Migut.L00146' => 'egut', 'Migut.L00437' => 'egut', 'Migut.N02810' => 'egut', 'MSTRG.2574' => 'ama', 'MSTRG.3492' => 'ama', 'Nitab4.5_0000024g0070' => 'nta', 'Nitab4.5_0000396g0030' => 'nta', 'Nitab4.5_0001614g0140' => 'nta', 'Nitab4.5_0006325g0020' => 'nta', 'Nitab4.5_0007622g0040' => 'nta', 'Nitab4.5_0009388g0010' => 'nta', 'Nitab4.5_0011635g0010' => 'nta', 'Nitab4.5_0012999g0020' => 'nta', 'Nn1g05412' => 'nnu', 'Nn5g30064' => 'nnu', 'Nn5g30703' => 'nnu', 'Nn6g34567' => 'nnu', 'Nn6g35525' => 'nnu', 'Nn8g38805' => 'nnu', 'Oeu013364.1' => 'oeu', 'Oeu039767.1' => 'oeu', 'Oeu061528.1' => 'oeu', 'Oeu061814.1' => 'oeu', 'Os02g0756100' => 'osa', 'Os03g0672500' => 'osa', 'Os03g0726700' => 'osa', 'Os07g0132300' => 'osa', 'Os08g0485500' => 'osa', 'Peaxi162Scf00038g01633' => 'pax', 'Peaxi162Scf00096g01617' => 'pax', 'Peaxi162Scf00295g01127' => 'pax', 'Peaxi162Scf00628g00516' => 'pax', 'Peaxi162Scf00724g00001' => 'pax', 'PGR004G0998' => 'pgr', 'PGR031G3721' => 'pgr', 'PGR083G0001' => 'pgr', 'PGR102G2054' => 'pgr', 'PGR119G2254' => 'pgr', 'PGSC0003DMG400002490' => 'stu', 'PGSC0003DMG400004934' => 'stu', 'PGSC0003DMG400016161' => 'stu', 'PGSC0003DMG400016799' => 'stu', 'PGSC0003DMG400030666' => 'stu', 'Phvul.001G253101' => 'pvu', 'Phvul.002G008300' => 'pvu', 'Phvul.002G257600' => 'pvu', 'Phvul.003G231800' => 'pvu', 'Phvul.005G157900' => 'pvu', 'Phvul.009G113100' => 'pvu', 'Phvul.009G230900' => 'pvu', 'Phvul.010G137100' => 'pvu', 'Potri.002G112900' => 'ptr', 'Potri.003G042300' => 'ptr', 'Potri.005G073700' => 'ptr', 'Potri.007G095400' => 'ptr', 'Prupe.1G442900' => 'ppe', 'Prupe.3G046300' => 'ppe', 'Prupe.6G190800' => 'ppe', 'Prupe.6G213400' => 'ppe', 'Prupe.7G206500' => 'ppe', 'Psat0s777g0080' => 'psa', 'Psat2g172760' => 'psa', 'Psat4g187440' => 'psa', 'Psat5g019920' => 'psa', 'Psat5g090560' => 'psa', 'Psat5g291960' => 'psa', 'PSO063G3263' => 'pso', 'PSO210G1817' => 'pso', 'PSO210G6550' => 'pso', 'PSO541G2242' => 'pso', 'PSO541G4201' => 'pso', 'PSO675G4119' => 'pso', 'PSO781G0026' => 'pso', 'PSO832G2661' => 'pso', 'QL02p062187' => 'qlo', 'QL05p009975' => 'qlo', 'QL06p038252' => 'qlo', 'QL06p048536' => 'qlo', 'QL12p040765' => 'qlo', 'RcHm_v2.0_Chr2g0093721' => 'rch', 'RcHm_v2.0_Chr2g0109291' => 'rch', 'RcHm_v2.0_Chr2g0112781' => 'rch', 'RcHm_v2.0_Chr2g0143991' => 'rch', 'RcHm_v2.0_Chr6g0306881' => 'rch', 'Rhsim06G0066900' => 'rsi', 'Rhsim08G0012500' => 'rsi', 'Rhsim10G0087500' => 'rsi', 'Sabra03G0023100' => 'sbr', 'Sabra05G0060200' => 'sbr', 'Sabra07G0078600' => 'sbr', 'SalBow2G1140' => 'sbo', 'SalBow3G1625' => 'sbo', 'SalBow3G1841' => 'sbo', 'SalBow3G3420' => 'sbo', 'SalBow5G5405' => 'sbo', 'SalBow6G1965' => 'sbo', 'Sc03g0000050' => 'sci', 'Sc07g0000260' => 'sci', 'Sc12g0010380' => 'sci', 'Sc15g0005280' => 'sci', 'Sc16g0000850' => 'sci', 'Sed0000325' => 'sed', 'Sed0002210' => 'sed', 'Sed0002441' => 'sed', 'Sed0007365' => 'sed', 'Sed0011643' => 'sed', 'Sed0013063' => 'sed', 'Sed0013356' => 'sed', 'Sed0014485' => 'sed', 'Sed0017228' => 'sed', 'Sed0022697' => 'sed', 'Sed0023932' => 'sed', 'Sed0024153' => 'sed', 'Sed0024449' => 'sed', 'Sed0026387' => 'sed', 'SEGI_18732' => 'sgi', 'SEGI_34139' => 'sgi', 'SEGI_35115' => 'sgi', 'SGA_v2.0_scaffold111G31505' => 'sas', 'SGA_v2.0_scaffold115G32182' => 'sas', 'SGA_v2.0_scaffold121G33083' => 'sas', 'SGA_v2.0_scaffold21G09401' => 'sas', 'SGA_v2.0_scaffold269G46257' => 'sas', 'SGA_v2.0_scaffold4G02048' => 'sas', 'SHI11998' => 'shi', 'SHI29437' => 'shi', 'SMO141G0245' => 'smo', 'SMO228G0182' => 'smo', 'SMO343G0137' => 'smo', 'SMO364G0861' => 'smo', 'SMO367G0439' => 'smo', 'Solyc02g091910.2' => 'sly', 'Solyc03g121790.2' => 'sly', 'Solyc04g077170.3' => 'sly', 'Solyc05g051545.1' => 'sly', 'Solyc11g009040.3' => 'sly', 'Sopen00g009610' => 'spe', 'Sopen01g032650' => 'spe', 'Sopen02g036480' => 'spe', 'Sopen03g040600' => 'spe', 'Sopen05g029990' => 'spe', 'Sopen11g004810' => 'spe', 'Sp3g12130' => 'spa', 'Sp6g33120' => 'spa', 'Sp7g35460' => 'spa', 'TAR369G0627' => 'tar', 'TAR383G0668' => 'tar', 'TAR624G1449' => 'tar', 'TAR625G1361' => 'tar', 'TAR636G2663' => 'tar', 'TAR636G3444' => 'tar', 'THA.LOC104798884' => 'tha', 'THA.LOC104801672' => 'tha', 'THA.LOC104807644' => 'tha', 'THA.LOC104820042' => 'tha', 'THA.LOC104824933' => 'tha', 'Thecc.01G079400' => 'tca', 'Thecc.01G098100' => 'tca', 'Thecc.06G114400' => 'tca', 'Thecc.08G081400' => 'tca', 'Thecc.09G085700' => 'tca', 'Thhalv10015039m.g' => 'esa', 'Thhalv10021776m.g' => 'esa', 'Thhalv10026561m.g' => 'esa', 'TPR.G12333' => 'tpr', 'TPR.G16001' => 'tpr', 'TPR.G21669' => 'tpr', 'TPR.G27681' => 'tpr', 'TPR.G28857' => 'tpr', 'TPR.G3716' => 'tpr', 'TPR.G6240' => 'tpr', 'TPR.G6563' => 'tpr', 'TWI12G1322' => 'twi', 'TWI31G1276' => 'twi', 'TWI53G1981' => 'twi', 'TWI74G0420' => 'twi', 'TWI77G0463' => 'twi', 'unitig_0.g2604' => 'ugi', 'unitig_21.g20622' => 'ugi', 'unitig_37.g12386' => 'ugi', 'unitig_46.g18681' => 'ugi', 'unitig_736.g22350' => 'ugi', 'unitig_736.g22574' => 'ugi', 'unitig_899.g14548' => 'ugi', 'vmacro18588' => 'vma', 'vmacro21396' => 'vma', 'vmacro23044' => 'vma', 'VMungo0251G2945' => 'vmu', 'VMungo0251G3393' => 'vmu', 'VMungo0331G1967' => 'vmu', 'VMungo1080G1335' => 'vmu', 'VMungo1215G1531' => 'vmu', 'VMungo1309G0903' => 'vmu', 'VMungo1383G0952' => 'vmu', 'Zm00001eb055900' => 'zma', 'Zm00001eb121050' => 'zma', 'Zm00001eb194040' => 'zma', 'Zm00001eb255380' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001149' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001149' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001149' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001149' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151