Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 1.3e-277 959.1 485 100.0
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 8.2e-261 903.3 467 96.4
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 9.9e-190 667.2 468 74.6
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 2.4e-172 609.4 468 67.5
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 2.4e-167 592.8 467 67.5
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 9.9e-166 587.4 474 65.4
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 1.9e-164 583.2 473 66.0
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 3.5e-163 578.9 473 65.3
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 3.5e-163 578.9 473 64.7
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 4.6e-163 578.6 468 66.0
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.3e-162 577.0 474 65.2
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 8.7e-162 574.3 474 65.2
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 1.1e-161 573.9 462 66.0
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 6.2e-160 568.2 477 63.9
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 3.1e-159 565.8 472 63.6
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 4.0e-159 565.5 469 65.0
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 1.3e-157 560.5 475 63.4
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 4.9e-157 558.5 469 64.4
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 1.4e-156 557.0 473 61.7
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 9.3e-156 554.3 475 62.1
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.2e-155 553.9 468 63.2
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.6e-155 553.5 468 63.2
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 6.0e-155 551.6 468 63.5
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.0e-154 550.8 467 63.6
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 1.1e-153 547.4 475 61.7
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 4.3e-153 545.4 473 64.1
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 5.7e-153 545.0 472 61.0
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 9.7e-153 544.3 468 62.6
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 1.1e-151 540.8 467 64.0
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 6.5e-149 531.6 467 60.8
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 2.5e-148 529.6 470 59.4
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.6e-147 526.9 475 58.7
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 1.8e-146 523.5 478 59.4
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 8.7e-146 521.2 475 58.1
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 1.5e-142 510.4 471 59.4
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 3.4e-142 509.2 467 60.8
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 8.5e-141 504.6 465 59.4
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 1.1e-140 504.2 467 57.6
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 2.1e-139 500.0 471 57.3
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 9.7e-137 491.1 477 55.8
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 1.7e-136 490.3 619 48.9
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 2.2e-136 490.0 474 57.2
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 2.8e-136 489.6 467 56.7
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 4.8e-136 488.8 472 57.4
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 3.1e-135 486.1 472 57.0
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 5.9e-134 481.9 460 58.3
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 1.0e-133 481.1 476 55.3
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 2.1e-131 473.4 471 54.4
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 2.7e-131 473.0 449 57.2
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 4.7e-131 472.2 463 56.2
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 8.0e-131 471.5 477 54.7
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 1.8e-130 470.3 477 54.5
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 5.2e-130 468.8 466 53.2
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 5.2e-130 468.8 461 57.7
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 2.0e-129 466.8 462 55.8
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 2.0e-129 466.8 472 53.4
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 4.4e-129 465.7 476 55.9
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 7.4e-129 464.9 460 55.9
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 4.8e-128 462.2 466 55.6
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 2.6e-126 456.4 467 55.2
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 2.9e-125 453.0 462 55.4
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 2.9e-125 453.0 462 55.2
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 2.9e-125 453.0 451 55.4
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 5.0e-125 452.2 454 55.3
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 5.0e-125 452.2 465 53.8
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 2.5e-124 449.9 458 55.2
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 2.5e-124 449.9 462 54.8
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 4.2e-124 449.1 469 53.7
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 7.2e-124 448.4 454 54.6
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 2.3e-122 443.4 454 54.6
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 2.3e-122 443.4 471 52.9
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 2.6e-121 439.9 458 54.1
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 1.3e-120 437.6 472 53.2
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 3.7e-120 436.0 469 53.1
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 2.4e-119 433.3 466 53.6
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 5.3e-119 432.2 476 51.7
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 1.6e-118 430.6 471 52.9
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.6e-118 430.6 469 52.5
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 2.7e-118 429.9 465 53.3
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 1.3e-117 427.6 472 52.1
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 3.6e-115 419.5 472 51.1
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 5.9e-110 402.1 478 50.0
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 3.0e-106 389.8 472 49.2
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 1.1e-103 381.3 414 53.6
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 1.8e-103 380.6 499 45.5
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 3.1e-103 379.8 467 46.5
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 1.6e-102 377.5 502 46.2
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 5.0e-101 372.5 433 52.7
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 5.6e-100 369.0 371 54.7
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 7.0e-95 352.1 434 47.9
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 2.7e-94 350.1 464 43.1
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 2.6e-89 333.6 310 60.3
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.3e-88 331.3 309 58.9
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 2.3e-85 320.5 475 41.5
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 3.5e-78 296.6 308 55.2
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 6.0e-78 295.8 323 52.3
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 5.4e-63 246.1 175 68.6
FvH4_3g27031 Fragaria vesca HOM05D004148 ORTHO05D004709 1.6e-62 244.6 352 43.5
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 5.6e-60 236.1 174 69.5
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 4.8e-59 233.0 244 53.7
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 4.5e-57 226.5 175 65.7
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 1.1e-55 221.9 358 40.5
A06p26680 Brassica napus HOM05D004148 ORTHO05D004709 2.1e-51 207.6 191 55.5
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.5e-47 194.1 400 36.0
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 1.0e-45 188.7 298 40.3
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 2.3e-45 187.6 490 31.0
SHI25295 Sapria himalayana HOM05D004148 ORTHO05D004709 9.6e-44 182.2 175 52.0
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 2.6e-41 174.1 277 43.7
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 1.6e-38 164.9 414 33.6
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 1.4e-34 151.8 248 38.3
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 2.3e-29 134.4 137 59.1
CARHR148440 Cardamine hirsuta HOM05D004148 ORTHO05D004709 4.8e-27 126.7 124 55.6
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 4.1e-26 123.6 209 44.0
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 5.3e-26 123.2 188 40.4
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.4e-23 115.2 188 35.1
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 7.2e-23 112.8 105 55.2
Psat6g175800 Pisum sativum HOM05D004148 ORTHO05D004709 1.2e-22 112.1 108 56.5
BraA06t25600Z Brassica rapa HOM05D004148 ORTHO05D004709 2.7e-22 110.9 95 58.9
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 1.1e-20 105.5 318 29.2
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 5.3e-18 96.7 117 53.8
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 1.5e-17 95.1 116 52.6
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 4.5e-17 93.6 82 61.0
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 4.7e-14 83.6 116 49.1
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 8.8e-13 79.3 107 50.5
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 8.8e-13 79.3 107 50.5
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 8.8e-13 79.3 107 50.5
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 8.8e-13 79.3 107 50.5
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 1.1e-12 79.0 116 48.3
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 8.2e-11 72.8 116 44.0
Thhalv10029231m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 3.1e-10 70.9 83 49.4


User provided reference genes

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