Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.5e-95 352.8 182 100.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 5.9e-79 297.7 190 84.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 2.3e-75 285.8 190 79.5
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 3.7e-73 278.5 190 76.3
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 2.4e-72 275.8 190 76.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 4.1e-72 275.0 190 76.3
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 9.1e-72 273.9 189 75.7
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.6e-71 273.1 190 74.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.7e-71 272.3 190 75.3
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 4.5e-71 271.6 190 73.7
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 5.9e-71 271.2 193 72.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 2.2e-70 269.2 189 74.1
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.2e-70 269.2 200 72.5
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 2.9e-70 268.9 189 73.0
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.9e-70 268.9 190 75.3
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 3.8e-70 268.5 193 73.1
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 5.0e-70 268.1 190 73.2
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.1e-69 266.9 190 73.2
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.1e-69 266.9 190 73.2
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 1.5e-69 266.5 190 72.6
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 1.9e-69 266.2 190 72.6
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.9e-69 266.2 190 72.1
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 3.2e-69 265.4 193 72.0
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.2e-69 265.4 190 72.6
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 4.2e-69 265.0 190 71.6
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 5.5e-69 264.6 190 73.2
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 7.2e-69 264.2 193 70.5
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 9.4e-69 263.8 193 71.5
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 9.4e-69 263.8 193 71.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 1.2e-68 263.5 190 72.1
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 2.7e-68 262.3 193 71.0
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 4.7e-68 261.5 188 72.3
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 6.1e-68 261.2 190 71.6
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.4e-67 260.0 193 70.5
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 1.8e-67 259.6 193 68.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 1.8e-67 259.6 193 71.5
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 1.8e-67 259.6 194 69.6
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 1.8e-67 259.6 190 70.5
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.3e-67 259.2 206 67.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 3.0e-67 258.8 190 72.1
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 5.2e-67 258.1 190 72.1
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 6.8e-67 257.7 193 71.0
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 8.8e-67 257.3 193 70.5
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.2e-66 256.9 190 70.5
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.2e-66 256.9 193 70.5
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 3.4e-66 255.4 194 69.1
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 3.4e-66 255.4 193 69.4
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 3.4e-66 255.4 190 71.1
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 3.4e-66 255.4 190 70.5
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.4e-66 255.0 190 70.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 4.4e-66 255.0 190 70.5
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 7.5e-66 254.2 190 70.5
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 7.5e-66 254.2 192 68.8
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 1.3e-65 253.4 190 70.0
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.2e-65 252.7 190 69.5
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 2.2e-65 252.7 193 69.4
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.7e-65 251.9 190 68.9
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.9e-65 251.5 193 68.4
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 4.9e-65 251.5 193 67.4
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 1.1e-64 250.4 193 67.4
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 1.4e-64 250.0 193 67.4
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 1.4e-64 250.0 193 67.4
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 1.4e-64 250.0 190 68.9
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 1.8e-64 249.6 193 67.9
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 3.1e-64 248.8 189 68.3
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 3.1e-64 248.8 193 67.4
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 4.1e-64 248.4 194 67.5
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 4.1e-64 248.4 194 67.5
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 5.4e-64 248.1 210 63.8
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.2e-64 247.3 190 66.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.2e-64 247.3 190 66.8
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 9.2e-64 247.3 190 66.8
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 1.2e-63 246.9 190 68.4
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 1.6e-63 246.5 194 67.5
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-63 246.1 194 67.0
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.7e-63 245.7 190 69.5
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 3.5e-63 245.4 194 67.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 4.5e-63 245.0 193 66.3
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 7.7e-63 244.2 193 66.3
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 1.3e-62 243.4 193 66.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 1.3e-62 243.4 190 67.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-62 243.0 194 67.0
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-61 240.4 194 66.0
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 1.1e-61 240.4 194 66.0
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 1.1e-61 240.4 190 66.8
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 1.5e-61 240.0 190 65.8
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 2.5e-61 239.2 193 65.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 3.3e-61 238.8 193 65.3
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 1.8e-59 233.0 190 64.2
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.8e-59 233.0 194 62.9
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 3.0e-59 232.3 189 64.6
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 5.2e-59 231.5 189 63.5
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 6.8e-59 231.1 139 83.5
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 1.2e-58 230.3 189 65.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 1.5e-58 229.9 139 83.5
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.0e-58 229.6 231 56.3
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 3.4e-58 228.8 190 62.1
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.4e-58 228.8 136 85.3
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 7.5e-58 227.6 190 64.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 4.9e-57 224.9 138 82.6
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 8.3e-57 224.2 190 63.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 5.4e-56 221.5 190 61.1
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.9e-55 218.0 193 59.1
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 7.3e-53 211.1 139 77.0
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 1.0e-51 207.2 193 56.0
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.0e-51 205.3 193 59.1
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 8.9e-51 204.1 191 56.5
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.9e-49 199.1 138 73.2
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 4.6e-47 191.8 109 91.7
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.3e-46 190.3 163 63.2
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 8.6e-46 187.6 160 63.1
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-44 183.7 173 53.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.1e-43 179.1 221 48.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.0e-38 164.1 163 56.4
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 6.6e-38 161.4 192 42.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.5e-37 160.2 221 38.0
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.8e-36 156.0 189 45.5
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.1e-35 152.5 187 42.8
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.9e-33 146.0 193 37.8
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 8.4e-33 144.4 197 38.6
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.2e-28 130.6 135 45.2
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.3e-22 110.5 95 60.0
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 7.4e-13 78.2 49 79.6
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.8e-11 73.6 140 30.7
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 6.0e-07 58.5 45 62.2
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.0e-06 56.2 190 23.2


User provided reference genes

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