Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 3.7e-123 444.9 224 100.0
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 1.5e-63 246.9 190 70.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 6.4e-59 231.5 184 67.9
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 6.4e-59 231.5 184 67.9
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.1e-58 228.8 182 67.6
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.6e-54 215.7 190 62.1
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 4.7e-54 215.3 191 60.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 6.2e-54 214.9 185 62.7
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 6.2e-54 214.9 185 62.7
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 8.1e-54 214.5 188 61.7
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 8.1e-54 214.5 190 60.5
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 8.1e-54 214.5 187 62.6
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.1e-54 214.5 187 62.6
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.1e-54 214.5 187 62.6
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 8.1e-54 214.5 187 62.6
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.1e-53 214.2 190 62.1
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.4e-53 213.8 201 59.2
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-53 213.4 187 62.0
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.8e-53 213.4 187 62.0
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.8e-53 213.4 190 60.5
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 1.8e-53 213.4 187 62.0
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.8e-53 213.4 187 60.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 2.4e-53 213.0 190 62.1
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.4e-53 213.0 190 60.5
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.4e-53 213.0 190 60.5
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.4e-53 213.0 187 62.0
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.4e-53 213.0 187 62.0
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 4.0e-53 212.2 187 62.0
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.0e-53 212.2 212 56.1
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.2e-53 211.8 190 58.9
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 5.2e-53 211.8 190 62.1
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 5.2e-53 211.8 184 62.0
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 5.2e-53 211.8 187 61.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 5.2e-53 211.8 187 60.4
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 6.8e-53 211.5 187 61.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 6.8e-53 211.5 186 60.2
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 6.8e-53 211.5 186 60.2
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 6.8e-53 211.5 187 61.5
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.8e-53 211.5 190 60.5
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.8e-53 211.5 190 60.5
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 8.9e-53 211.1 187 61.0
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 8.9e-53 211.1 187 61.0
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 8.9e-53 211.1 190 61.6
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.9e-53 211.1 187 61.0
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 8.9e-53 211.1 190 61.6
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 8.9e-53 211.1 187 60.4
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 8.9e-53 211.1 187 61.0
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 8.9e-53 211.1 190 61.6
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.2e-52 210.7 187 60.4
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.2e-52 210.7 193 59.1
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.5e-52 210.3 191 60.2
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.5e-52 210.3 187 61.0
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.5e-52 210.3 186 60.2
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.5e-52 210.3 187 59.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.5e-52 210.3 186 60.2
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.5e-52 210.3 183 60.7
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-52 209.9 188 60.6
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.0e-52 209.9 190 60.5
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 2.0e-52 209.9 187 61.0
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 2.0e-52 209.9 190 60.0
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.0e-52 209.9 183 60.1
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 2.6e-52 209.5 190 60.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 2.6e-52 209.5 190 60.0
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.6e-52 209.5 187 61.5
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.6e-52 209.5 187 61.0
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 2.6e-52 209.5 187 61.0
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 2.6e-52 209.5 198 58.6
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.6e-52 209.5 187 61.5
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.6e-52 209.5 187 59.9
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.6e-52 209.5 180 61.1
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 3.4e-52 209.1 187 60.4
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 3.4e-52 209.1 187 59.9
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.4e-52 209.1 184 61.4
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.4e-52 209.1 187 61.0
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.4e-52 209.1 184 62.0
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.4e-52 209.1 184 62.0
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.4e-52 208.8 187 61.0
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.4e-52 208.8 187 61.0
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 4.4e-52 208.8 186 60.2
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 4.4e-52 208.8 184 61.4
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 5.8e-52 208.4 187 59.4
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.8e-52 208.4 187 60.4
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 7.6e-52 208.0 184 61.4
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 7.6e-52 208.0 190 60.0
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 9.9e-52 207.6 184 61.4
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 9.9e-52 207.6 184 60.9
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 9.9e-52 207.6 187 60.4
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 9.9e-52 207.6 187 61.0
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 9.9e-52 207.6 187 58.3
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.3e-51 207.2 190 59.5
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.3e-51 207.2 187 60.4
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.3e-51 207.2 184 60.9
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.3e-51 207.2 196 59.7
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-51 207.2 189 59.3
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.3e-51 207.2 184 60.9
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.3e-51 207.2 184 60.9
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 1.3e-51 207.2 188 59.0
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.3e-51 207.2 197 57.9
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.3e-51 207.2 184 60.9
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.3e-51 207.2 204 56.4
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.7e-51 206.8 184 60.9
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.7e-51 206.8 184 60.9
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.7e-51 206.8 184 60.9
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.7e-51 206.8 190 60.0
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.7e-51 206.8 190 60.0
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.7e-51 206.8 187 60.4
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.7e-51 206.8 180 61.7
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 2.2e-51 206.5 190 60.0
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 2.2e-51 206.5 190 60.0
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 2.2e-51 206.5 193 59.1
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.2e-51 206.5 187 59.4
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.2e-51 206.5 187 59.4
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.2e-51 206.5 187 59.4
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.2e-51 206.5 187 59.4
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.2e-51 206.5 184 60.9
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.2e-51 206.5 187 59.4
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.9e-51 206.1 180 60.6
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.9e-51 206.1 180 60.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.9e-51 206.1 180 60.6
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.9e-51 206.1 180 60.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.9e-51 206.1 180 60.6
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 3.8e-51 205.7 190 59.5
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 3.8e-51 205.7 184 60.3
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 3.8e-51 205.7 188 58.5
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.9e-51 205.3 187 60.4
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 4.9e-51 205.3 190 59.5
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 4.9e-51 205.3 190 59.5
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.9e-51 205.3 187 58.8
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.4e-51 204.9 184 58.7
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 6.4e-51 204.9 189 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.9e-50 203.4 184 59.2
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.9e-50 203.4 184 59.8
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.9e-50 203.4 195 56.9
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 3.2e-50 202.6 181 59.1
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 3.2e-50 202.6 184 59.2
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 5.4e-50 201.8 190 57.9
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 7.1e-50 201.4 180 60.0
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 4.6e-49 198.7 185 57.3
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.7e-48 196.8 180 59.4
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 3.0e-48 196.1 180 58.9
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.9e-48 195.7 181 58.6
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 2.4e-45 186.4 180 57.2
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 7.6e-44 181.4 168 59.5
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.4e-42 175.3 186 53.2
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 5.1e-40 168.7 182 47.8
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 6.6e-40 168.3 175 50.9
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.5e-39 166.4 181 47.5
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.0e-36 156.8 153 58.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.0e-36 156.8 171 50.3
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.0e-36 156.8 179 48.0
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.9e-31 140.2 180 47.2
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.3e-31 139.0 143 54.5
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.5e-28 130.6 139 53.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 4.5e-28 129.0 139 51.8
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.9e-27 126.3 139 51.8
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.4e-26 124.0 75 82.7
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.9e-26 123.6 145 54.5
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 3.2e-26 122.9 69 85.5
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 4.2e-26 122.5 72 80.6
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 9.3e-26 121.3 139 48.2
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.8e-24 117.1 196 40.8
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 8.2e-22 108.2 53 96.2
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.2e-18 96.3 127 47.2
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.2e-18 95.9 75 66.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.7e-17 93.2 127 46.5
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.3e-16 90.9 127 45.7
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.3e-14 82.0 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 5.3e-13 79.0 39 92.3


User provided reference genes

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