Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 3211.0 1793 100.0
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 2924.4 1691 92.8
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 2090.5 1711 69.9
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 2014.6 1689 67.5
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1556.6 1277 69.1
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1530.8 1727 55.7
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1530.8 1727 55.7
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1498.8 1689 53.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1421.0 1727 52.2
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 1405.2 1734 51.4
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1400.2 1683 52.9
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1393.6 1713 52.4
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1392.9 1734 51.7
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1355.5 1720 50.0
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 1307.4 1782 48.4
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1285.0 1740 48.7
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 1280.8 1745 47.9
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 1275.8 1732 47.9
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 0.0e+00 1266.9 1708 48.2
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1259.2 1704 48.7
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 0.0e+00 1230.7 1743 47.0
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 0.0e+00 1226.8 1843 45.4
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 0.0e+00 1216.4 1788 46.0
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 0.0e+00 1206.8 1768 46.4
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1200.7 1704 46.4
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 0.0e+00 1197.2 1747 45.9
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1165.6 1644 47.9
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 0.0e+00 1129.8 1821 44.3
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1103.2 1836 42.9
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 1094.7 1741 44.2
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 0.0e+00 1093.2 1848 42.9
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1090.9 1712 43.1
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1090.5 1709 43.1
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 0.0e+00 1078.2 1702 44.5
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.2e-311 1074.7 1749 43.7
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 5.4e-310 1068.5 1734 43.6
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.1e-310 1068.1 1771 43.3
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 4.6e-309 1065.4 1719 45.1
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 6.4e-303 1045.0 1680 43.1
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 3.5e-301 1039.3 1851 41.9
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 9.6e-299 1031.2 1765 40.9
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.7e-295 1020.4 2103 38.2
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 3.8e-295 1019.2 1703 42.8
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 1.0e-292 1011.1 1761 41.1
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 4.3e-291 1005.7 1764 41.0
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.1e-290 1003.4 1766 41.3
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 4.1e-289 999.2 1784 40.0
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 5.3e-289 998.8 1691 43.7
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 5.5e-286 988.8 1763 41.1
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.3e-282 977.6 1727 41.2
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 2.8e-282 976.5 1720 41.2
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 6.3e-282 975.3 1772 40.3
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.1e-281 974.5 1705 41.4
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 5.3e-281 972.2 1796 40.5
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 4.5e-280 969.1 1755 40.5
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 3.2e-278 963.0 1706 41.2
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.3e-276 956.8 1760 41.1
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.1e-273 948.0 1766 40.5
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 3.1e-273 946.4 1778 39.8
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 3.7e-266 922.9 1674 40.5
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.4e-265 920.2 1576 42.8
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 3.1e-265 919.8 1694 41.1
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 9.7e-259 898.3 1703 40.0
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 4.5e-256 889.4 1773 38.4
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.7e-255 887.5 1677 40.5
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 4.2e-254 882.9 1721 38.9
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 1.2e-253 881.3 1710 40.0
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 7.2e-246 855.5 1185 46.8
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.4e-236 824.7 1707 38.2
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.2e-234 817.4 1747 38.0
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.4e-233 814.7 1740 37.6
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 4.7e-229 799.7 1749 36.0
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 4.0e-228 796.6 1773 36.4
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 4.9e-226 789.6 1504 40.6
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 9.2e-225 785.4 1686 36.8
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 1.8e-220 771.2 1699 37.4
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 6.6e-215 752.7 966 47.6
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 8.9e-212 742.3 1696 35.5
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 5.8e-211 739.6 1730 35.7
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.3e-191 675.2 791 49.8
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.9e-185 654.8 1722 33.6
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 9.0e-180 636.0 1715 33.4
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.5e-177 626.7 999 46.1
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.4e-169 602.1 878 44.5
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.5e-169 601.3 1433 36.9
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.5e-169 601.3 1433 36.9
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 2.3e-167 594.7 1429 36.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.5e-158 565.5 1687 32.4
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.4e-151 542.3 920 44.6
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 3.9e-151 540.8 834 42.1
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.2e-145 520.0 863 44.4
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 4.1e-140 504.2 913 40.0
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 5.9e-139 500.4 652 54.1
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 3.0e-114 418.3 444 48.4
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 4.9e-109 401.0 645 48.4
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 9.9e-102 376.7 904 39.4
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 9.2e-100 370.2 799 37.5
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 8.6e-98 363.6 929 36.1
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 1.9e-92 345.9 1234 27.1
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 1.9e-92 345.9 1062 28.5
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.0e-90 340.1 848 38.4
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.0e-90 340.1 670 36.0
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 3.1e-87 328.6 639 36.9
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 5.6e-81 307.8 1009 33.2
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.1e-79 303.5 471 39.9
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 2.6e-78 298.9 278 66.5
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 7.6e-78 297.4 502 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 2.5e-73 282.3 1100 27.4
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 7.4e-73 280.8 1747 24.4
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 2.1e-67 262.7 810 35.1
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.1e-65 256.9 428 42.5
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 3.3e-65 255.4 645 40.2
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.3e-64 253.4 233 54.5
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.1e-59 236.1 237 51.5
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 3.9e-58 231.9 231 57.6
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.5e-57 229.9 235 49.8
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 7.4e-57 227.6 194 61.9
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 4.8e-56 224.9 185 57.3
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 4.5e-54 218.4 237 55.7
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.2e-52 212.2 194 56.7
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 6.7e-50 204.5 146 63.7
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 8.2e-40 171.0 146 63.0
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 5.9e-38 164.9 201 46.8
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.1e-35 156.4 93 76.3
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.7e-35 156.0 980 27.2
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 8.0e-35 154.5 670 30.9
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 8.8e-34 151.0 144 54.2
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.7e-32 146.7 140 52.1
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 6.3e-32 144.8 683 30.2
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.2e-28 132.1 219 40.2
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 4.7e-27 128.6 870 26.8
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 5.2e-26 125.2 319 30.7
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 5.2e-26 125.2 372 34.9
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 3.5e-22 112.5 81 66.7
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 8.5e-21 107.8 244 30.7
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-19 102.8 75 65.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.3e-18 99.8 68 67.6
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 4.0e-18 99.0 75 64.0
Cpa.g.sc119.17 Carica papaya HOM05D004493 ORTHO05D005117 3.4e-17 95.9 301 33.9
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.4e-17 95.9 183 32.2
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 7.5e-17 94.7 371 30.5
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.2e-16 93.2 69 63.8
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.8e-15 90.1 99 60.6
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.4e-15 89.7 67 64.2
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 5.4e-15 88.6 70 64.3
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.7e-11 75.5 212 28.3
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 1.0e-10 74.3 360 32.5
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 3.0e-10 72.8 104 40.4
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.6e-09 69.7 59 54.2
Gohir.A07G008001 Gossypium hirsutum HOM05D036473 ORTHO05D036031 4.9e-08 65.5 93 37.6
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 4.9e-08 65.5 60 55.0
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 1.4e-07 63.9 88 38.6


User provided reference genes

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