Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22479 Corylus avellana HOM05D002920 ORTHO05D003118 6.1e-272 940.3 486 100.0
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 3.0e-170 602.4 370 87.8
QL09p018203 Quercus lobata HOM05D002920 ORTHO05D003118 8.2e-152 541.2 370 78.9
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.2e-142 510.8 370 75.9
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 4.4e-137 492.3 378 72.5
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 4.8e-136 488.8 379 73.1
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 2.2e-133 479.9 380 71.3
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 1.9e-132 476.9 375 72.5
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 1.6e-131 473.8 370 73.5
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 2.1e-131 473.4 373 71.0
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 2.7e-131 473.0 378 72.0
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 8.0e-131 471.5 370 72.2
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 8.8e-130 468.0 374 70.6
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 2.0e-129 466.8 370 71.1
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 9.7e-129 464.5 370 70.5
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 1.3e-128 464.2 370 70.5
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 1.7e-128 463.8 370 70.5
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 2.8e-128 463.0 370 68.9
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 6.3e-128 461.8 353 73.4
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.1e-127 461.1 354 74.0
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 2.4e-127 459.9 374 70.6
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 3.1e-127 459.5 371 70.6
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 4.1e-127 459.1 373 69.7
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 7.0e-127 458.4 351 73.5
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 9.1e-127 458.0 359 72.7
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 2.0e-126 456.8 371 70.6
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 2.0e-126 456.8 371 72.0
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 4.5e-126 455.7 377 69.8
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 7.7e-126 454.9 353 72.5
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 2.9e-125 453.0 380 66.6
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.8e-125 452.6 359 72.4
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 1.1e-124 451.1 373 69.7
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 3.2e-124 449.5 377 66.3
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 4.2e-124 449.1 378 66.9
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 5.5e-124 448.7 371 70.1
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.2e-123 447.6 371 70.6
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 1.2e-123 447.6 375 69.9
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 1.6e-123 447.2 372 69.1
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 2.1e-123 446.8 371 69.8
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.0e-122 444.5 363 71.1
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 1.4e-122 444.1 377 65.8
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 2.3e-122 443.4 377 65.8
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 4.0e-122 442.6 377 65.3
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 5.2e-122 442.2 378 69.3
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 6.8e-122 441.8 375 67.5
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 1.2e-121 441.0 377 66.0
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.0e-121 440.3 373 68.4
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 1.7e-120 437.2 377 65.5
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 2.2e-120 436.8 374 66.3
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 3.7e-120 436.0 353 70.0
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 1.8e-119 433.7 374 66.8
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 3.1e-119 433.0 374 65.8
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 1.6e-118 430.6 374 65.5
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 3.5e-118 429.5 378 66.1
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 3.5e-118 429.5 374 64.4
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 3.5e-118 429.5 374 66.6
Oeu038176.1 Olea europaea HOM05D002920 ORTHO05D003118 1.3e-117 427.6 372 66.4
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 3.8e-117 426.0 372 67.5
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 6.5e-117 425.2 376 66.5
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 6.5e-117 425.2 350 69.7
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 1.1e-116 424.5 374 64.7
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 1.2e-115 421.0 374 66.0
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 3.6e-115 419.5 376 64.6
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 1.8e-114 417.2 377 63.4
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 6.8e-114 415.2 376 63.6
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 8.8e-114 414.8 379 67.5
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 5.7e-113 412.1 385 62.9
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 9.8e-113 411.4 349 69.1
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.3e-112 411.0 374 63.4
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 1.7e-112 410.6 360 67.8
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 3.7e-112 409.5 379 63.6
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 3.7e-112 409.5 374 62.8
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 6.3e-112 408.7 375 62.4
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 1.8e-111 407.1 374 62.8
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 5.4e-111 405.6 370 64.6
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 7.0e-111 405.2 376 63.0
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 1.2e-110 404.4 374 63.1
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 3.5e-110 402.9 374 63.1
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 3.5e-110 402.9 381 62.7
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 3.5e-110 402.9 350 66.9
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 6.6e-109 398.7 371 64.2
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.9e-108 397.1 377 60.5
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 7.3e-108 395.2 372 62.6
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 7.3e-108 395.2 375 62.4
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 9.5e-108 394.8 403 59.3
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 1.4e-106 391.0 350 63.1
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 3.0e-106 389.8 367 62.9
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 3.0e-106 389.8 359 63.5
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 3.4e-105 386.3 372 63.7
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 5.7e-105 385.6 351 64.4
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 9.8e-105 384.8 374 61.8
Cpa.g.sc21.36 Carica papaya HOM05D002920 ORTHO05D003118 1.3e-104 384.4 319 71.2
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 1.3e-104 384.4 350 64.6
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 1.7e-104 384.0 350 64.6
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 6.4e-104 382.1 373 60.6
MD08G1208300 Malus domestica HOM05D002920 ORTHO05D003118 5.9e-102 375.6 340 65.9
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 1.0e-101 374.8 372 62.6
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.0e-101 374.8 372 62.1
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 1.2e-99 367.9 350 62.0
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 1.6e-99 367.5 357 61.9
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 2.1e-99 367.1 371 60.6
Ca_05459_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 5.8e-97 359.0 372 55.9
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 2.2e-96 357.1 371 59.6
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 6.4e-96 355.5 377 59.7
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 1.1e-95 354.8 371 58.5
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 1.4e-95 354.4 371 59.3
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 2.4e-95 353.6 371 59.6
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 2.4e-95 353.6 371 59.6
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 2.4e-95 353.6 371 59.6
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 4.1e-95 352.8 375 55.7
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 7.0e-95 352.1 362 59.7
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 1.2e-94 351.3 371 58.0
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 1.2e-94 351.3 371 58.0
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.0e-94 350.5 366 56.8
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 2.7e-94 350.1 353 59.8
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 5.6e-92 342.4 390 54.9
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 5.6e-92 342.4 356 57.6
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.6e-91 340.9 411 51.6
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.6e-91 340.9 358 57.0
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.6e-91 340.9 386 54.4
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 3.6e-91 339.7 370 55.7
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 4.7e-91 339.3 410 51.5
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 6.2e-91 339.0 388 54.6
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 8.1e-91 338.6 359 56.0
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.1e-90 338.2 386 53.9
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.1e-90 338.2 388 54.4
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 3.1e-90 336.7 370 56.2
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 4.0e-90 336.3 410 51.5
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 5.8e-89 332.4 371 56.6
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 5.8e-89 332.4 353 57.2
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 3.7e-88 329.7 411 50.9
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 1.1e-87 328.2 413 51.6
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 1.1e-87 328.2 413 51.6
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 3.5e-86 323.2 413 50.8
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 3.5e-86 323.2 413 50.8
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 5.1e-85 319.3 411 49.4
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 6.6e-85 318.9 391 52.4
vmacro21352 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 8.6e-85 318.5 326 56.1
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 3.1e-82 310.1 370 53.0
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 5.8e-81 305.8 415 50.4
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 6.0e-78 295.8 269 64.7
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 2.3e-77 293.9 371 48.2
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 8.7e-77 292.0 360 53.3
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 9.6e-76 288.5 350 52.9
SEGI_15502 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 9.6e-76 288.5 281 58.0
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 3.4e-73 280.0 362 52.8
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 4.6e-70 269.6 403 45.9
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.1e-68 265.0 369 50.9
PSO094G0001 Papaver somniferum HOM05D002920 ORTHO05D003118 3.6e-67 260.0 197 71.1
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 1.1e-66 258.5 357 49.0
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 1.7e-64 251.1 350 48.3
CANSAT25G0689 Cannabis sativa HOM05D002920 ORTHO05D003118 3.8e-64 250.0 145 84.8
MD08G1201600 Malus domestica HOM05D002920 ORTHO05D003118 1.1e-63 248.4 198 68.2
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 5.4e-63 246.1 356 48.0
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 2.1e-62 244.2 265 58.5
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 4.5e-57 226.5 351 45.9
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 4.5e-57 226.5 351 45.9
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 7.9e-54 215.7 297 47.8
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 1.0e-53 215.3 371 44.2
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 2.3e-53 214.2 371 43.9
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 8.7e-53 212.2 266 51.1
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 2.4e-50 204.1 351 43.3
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 1.1e-47 195.3 383 41.8
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 3.2e-47 193.7 389 39.1
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 1.1e-42 178.7 242 43.8
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 4.1e-42 176.8 341 39.0
Hund17270 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.2e-35 154.5 152 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 4.8e-27 126.7 356 33.7
Os03g0353701 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 5.5e-23 113.2 110 51.8
CAN.G375.38 Capsicum annuum HOM05D002920 ORTHO05D003118 3.3e-20 104.0 231 36.4
CAN.G375.37 Capsicum annuum HOM05D002920 ORTHO05D003118 5.7e-20 103.2 119 55.5
Hund17271 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.6e-12 77.8 88 53.4
MCO11G583 Micromonas commoda HOM05D002920 ORTHO05D003118 6.5e-08 63.2 84 33.3
Hund17269 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.5e-07 61.2 74 51.4


User provided reference genes

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