Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 2.1e-168 595.9 361 100.0
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 6.3e-157 557.8 362 91.7
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 2.3e-151 539.3 364 88.7
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 7.5e-102 374.8 367 66.8
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.2e-93 346.7 394 54.8
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.3e-90 337.4 384 59.4
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 5.6e-89 332.0 363 57.3
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 3.9e-66 256.1 374 54.0
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 1.9e-65 253.8 371 54.7
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 5.7e-57 225.7 421 50.6
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.4e-54 216.5 402 39.8
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 3.4e-54 216.5 375 42.7
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.3e-53 214.5 368 46.2
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.2e-51 208.0 440 43.2
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 1.6e-51 207.6 409 43.5
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 2.3e-50 203.8 385 42.9
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 4.3e-49 199.5 392 42.9
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 5.7e-49 199.1 357 46.2
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 8.2e-48 195.3 394 47.5
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.9e-44 184.1 389 39.1
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 2.5e-44 183.7 387 46.0
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 9.4e-44 181.8 376 38.8
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 7.9e-43 178.7 366 46.4
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 3.9e-42 176.4 381 41.7
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 6.7e-42 175.6 394 43.1
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 1.5e-41 174.5 453 34.2
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 5.7e-41 172.6 401 39.7
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 5.7e-41 172.6 386 36.5
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 7.4e-41 172.2 386 36.5
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.7e-40 169.9 369 37.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 5.3e-39 166.0 403 36.0
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.2e-38 164.9 357 42.0
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 4.5e-38 162.9 368 37.5
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.9e-38 162.5 369 42.5
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 7.7e-38 162.2 375 38.1
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.0e-37 161.8 359 36.8
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.9e-37 160.2 452 34.1
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 1.9e-36 157.5 398 42.7
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 2.5e-36 157.1 376 35.6
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.6e-35 154.5 380 45.0
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 3.6e-35 153.3 437 36.8
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 8.8e-34 148.7 386 37.8
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 1.1e-33 148.3 386 33.9
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.5e-33 147.9 362 47.8
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 2.0e-33 147.5 374 35.6
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 7.4e-33 145.6 367 48.8
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 9.7e-33 145.2 464 31.2
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.7e-32 144.4 452 34.1
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.2e-32 144.1 386 38.1
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 6.3e-32 142.5 376 37.2
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 5.3e-31 139.4 388 37.9
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 4.5e-30 136.3 371 34.5
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 4.5e-30 136.3 264 37.5
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 5.9e-30 136.0 382 39.3
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.3e-29 134.8 414 41.8
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 8.5e-29 132.1 366 39.1
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 2.5e-28 130.6 394 32.2
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 4.2e-28 129.8 442 40.3
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 5.5e-28 129.4 399 32.3
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.2e-27 128.3 197 45.7
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 2.1e-27 127.5 407 45.2
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 2.7e-27 127.1 387 37.0
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 3.6e-27 126.7 379 43.5
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 5.2e-26 122.9 423 43.0
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 6.7e-26 122.5 371 32.1
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 8.8e-26 122.1 365 40.5
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.2e-25 121.7 376 33.2
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 4.4e-25 119.8 396 33.1
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.7e-24 117.9 383 35.0
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 2.8e-24 117.1 358 32.7
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 3.7e-24 116.7 375 34.4
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 8.2e-24 115.5 379 46.4
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 1.1e-23 115.2 377 35.8
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.4e-23 114.8 368 32.9
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 1.4e-23 114.8 362 40.6
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 2.4e-23 114.0 409 35.5
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 3.5e-22 110.2 367 32.4
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 4.5e-22 109.8 370 32.2
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 4.5e-22 109.8 366 32.5
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 5.9e-22 109.4 370 37.0
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 1.0e-21 108.6 367 33.0
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.0e-21 108.6 368 32.9
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.7e-21 107.8 379 45.1
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 2.2e-21 107.5 373 33.0
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 3.8e-21 106.7 366 32.0
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 6.5e-21 105.9 365 32.6
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.5e-20 104.8 368 32.1
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.5e-20 104.8 372 32.5
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.9e-20 104.4 419 30.5
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 3.2e-20 103.6 381 31.2
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 5.5e-20 102.8 368 31.8
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.6e-19 101.3 424 39.2
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.6e-19 100.1 382 30.6
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 1.0e-18 98.6 370 30.3
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 1.4e-18 98.2 448 33.7
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 4.0e-18 96.7 388 34.3
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 4.0e-18 96.7 379 33.2
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 1.5e-17 94.7 375 42.4
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 1.5e-17 94.7 374 31.6
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.5e-17 94.7 391 28.6
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 7.5e-17 92.4 276 43.5
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 7.5e-17 92.4 375 29.1
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.7e-16 91.3 246 41.9
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.8e-16 90.5 146 45.2
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 3.7e-16 90.1 304 39.5
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 3.7e-16 90.1 376 30.9
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 4.1e-15 86.7 331 29.0
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 5.0e-13 79.7 393 28.8
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.0e-13 79.7 77 59.7
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 1.5e-12 78.2 164 39.0
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 2.5e-12 77.4 164 39.0
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 4.2e-12 76.6 378 28.0
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.6e-11 74.7 108 42.6
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.4e-10 71.6 102 43.1
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.8e-10 71.2 195 33.3
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 3.0e-10 70.5 206 35.0
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 4.0e-10 70.1 328 27.7
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 8.8e-10 68.9 97 45.4
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.2e-09 68.6 374 27.0
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 4.4e-09 66.6 91 40.7
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 2.2e-08 64.3 105 41.9
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 3.7e-08 63.5 74 50.0
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 1.4e-07 61.6 98 45.9
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 3.1e-07 60.5 198 33.8
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 1.6e-06 58.2 77 44.2
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 1.6e-06 58.2 372 28.8
AUR62019098 Chenopodium quinoa HOM05D034668 ORTHO05D006714 2.0e-06 57.8 318 33.6
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 2.7e-06 57.4 90 37.8
HanXRQChr15g0487561 Helianthus annuus HOM05D006001 ORTHO05D006714 5.9e-06 56.2 73 45.2


User provided reference genes

Program Settings