Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 4.9e-178 627.9 361 100.0
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 1.8e-159 566.2 363 91.2
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 4.5e-155 551.6 362 91.7
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 1.0e-98 364.4 367 66.2
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 4.3e-97 359.0 393 56.0
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.6e-88 330.5 385 59.7
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 2.4e-87 326.6 364 58.5
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 6.9e-63 245.4 375 49.6
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 2.6e-62 243.4 371 54.4
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 3.2e-60 236.5 448 41.1
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 4.1e-55 219.5 379 43.5
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 9.0e-55 218.4 392 41.8
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 2.2e-53 213.8 394 39.1
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 1.1e-52 211.5 372 43.8
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 9.3e-52 208.4 376 46.0
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.0e-50 204.9 368 50.0
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 6.7e-50 202.2 392 42.6
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 4.8e-48 196.1 376 41.5
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.4e-47 194.5 440 39.5
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 4.1e-47 193.0 401 41.6
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 2.0e-46 190.7 394 46.7
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.2e-45 187.2 395 43.8
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 3.8e-45 186.4 367 39.5
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 5.0e-45 186.0 367 39.5
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 4.2e-44 183.0 387 45.5
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 4.2e-44 183.0 379 40.6
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 5.5e-44 182.6 381 43.0
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 1.2e-43 181.4 455 36.7
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.4e-42 177.9 369 39.6
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.8e-42 177.6 375 40.8
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 3.0e-42 176.8 364 46.7
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 7.4e-41 172.2 394 39.1
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 8.2e-40 168.7 376 38.3
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 8.2e-40 168.7 368 38.9
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 8.2e-40 168.7 359 35.9
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.6e-38 163.7 360 43.1
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 7.7e-38 162.2 399 44.9
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.3e-37 161.4 452 34.7
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.9e-37 160.2 371 42.0
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.1e-36 158.3 396 43.2
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.4e-36 157.9 386 39.6
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 6.1e-35 152.5 386 34.7
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.3e-34 150.6 388 39.2
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 3.9e-34 149.8 390 39.0
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 8.8e-34 148.7 370 47.8
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 3.3e-33 146.7 453 33.8
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 4.4e-33 146.4 463 32.8
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 5.7e-33 146.0 368 36.4
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.2e-32 144.1 381 38.8
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 2.8e-32 143.7 445 37.5
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 8.2e-32 142.1 437 36.2
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 5.3e-31 139.4 373 35.4
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 7.0e-31 139.0 370 35.7
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.5e-30 136.7 369 38.5
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 1.0e-29 135.2 367 44.1
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.5e-28 131.3 399 34.3
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.5e-28 130.6 370 34.1
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 3.2e-28 130.2 367 41.4
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 3.2e-28 130.2 377 32.9
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 4.2e-28 129.8 434 39.9
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 7.2e-28 129.0 307 37.5
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 9.4e-28 128.6 461 30.2
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 9.4e-28 128.6 265 38.1
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 4.7e-27 126.3 443 39.1
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 3.0e-26 123.6 362 41.2
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 4.0e-26 123.2 384 34.6
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 6.7e-26 122.5 376 35.6
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 8.8e-26 122.1 379 37.7
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 7.5e-25 119.0 372 36.8
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.7e-24 117.9 382 35.1
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.7e-24 117.9 384 42.2
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 2.2e-24 117.5 430 33.0
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 2.2e-24 117.5 387 35.7
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 2.8e-24 117.1 383 34.2
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 3.7e-24 116.7 374 36.6
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 1.4e-23 114.8 386 34.7
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 4.1e-23 113.2 381 34.6
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 4.1e-23 113.2 386 43.3
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 1.6e-22 111.3 380 34.2
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 2.0e-22 110.9 364 32.7
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 2.7e-22 110.5 378 33.6
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 2.7e-22 110.5 358 34.4
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 7.7e-22 109.0 373 35.7
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 1.3e-21 108.2 440 34.5
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.3e-21 108.2 370 33.2
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 5.0e-21 106.3 421 37.8
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 5.0e-21 106.3 376 32.4
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 6.5e-21 105.9 264 36.7
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 8.5e-21 105.5 369 39.6
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.5e-20 104.8 386 41.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 2.5e-20 104.0 374 34.0
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 3.2e-20 103.6 362 34.5
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.2e-20 103.6 377 31.6
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 3.2e-20 103.6 373 30.8
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 3.2e-20 103.6 366 34.4
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 3.6e-19 100.1 363 31.4
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 8.0e-19 99.0 421 30.2
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.4e-18 98.2 381 30.7
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 1.8e-18 97.8 371 32.3
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 1.2e-17 95.1 383 39.4
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 1.2e-17 95.1 396 32.8
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 1.5e-17 94.7 374 32.6
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.6e-17 94.0 267 43.4
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 5.7e-17 92.8 325 31.4
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.1e-15 88.6 165 41.8
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 2.7e-14 84.0 371 29.6
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.0e-13 79.7 77 59.7
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 1.1e-12 78.6 303 38.9
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 3.2e-12 77.0 384 32.0
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 4.2e-12 76.6 163 36.8
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 7.2e-12 75.9 341 27.9
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 9.5e-12 75.5 163 36.8
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 1.2e-11 75.1 373 29.8
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.0e-10 72.0 222 36.9
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.2e-10 69.7 365 27.9
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.2e-09 68.6 185 34.6
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.2e-09 68.6 108 40.7
AUR62014355 Chenopodium quinoa HOM05D034668 ORTHO05D006714 2.2e-08 64.3 291 36.4
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 3.7e-08 63.5 372 29.3
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 1.1e-07 62.0 74 48.6
AUR62019098 Chenopodium quinoa HOM05D034668 ORTHO05D006714 1.8e-07 61.2 330 29.1
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 1.8e-07 61.2 100 45.0
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.1e-07 60.5 372 27.2
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 5.4e-07 59.7 197 36.5
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 2.0e-06 57.8 90 38.9
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 2.0e-06 57.8 222 33.8
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 2.0e-06 57.8 105 41.0
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 2.7e-06 57.4 77 44.2
HanXRQChr15g0487561 Helianthus annuus HOM05D006001 ORTHO05D006714 5.9e-06 56.2 73 46.6


User provided reference genes

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