Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 2328.9 1196 100.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 2087.0 1252 88.3
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1707.6 1258 73.8
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1625.9 1252 71.4
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1460.3 1268 64.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1342.8 1217 62.2
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1323.1 1279 59.3
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1296.6 1205 60.8
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 0.0e+00 1271.9 1205 61.2
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1262.3 1260 57.2
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1248.0 1276 57.8
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1240.3 1279 55.8
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1238.0 1261 56.9
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 0.0e+00 1230.7 1207 58.3
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 0.0e+00 1225.7 1283 55.6
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1222.2 1212 56.6
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1217.6 1244 55.8
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1216.4 1260 55.6
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1208.4 1261 55.9
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 0.0e+00 1208.0 1203 58.9
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1206.8 1211 57.0
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1197.6 1258 55.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1192.6 1269 54.1
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1192.6 1268 55.1
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1166.4 1272 54.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 0.0e+00 1163.3 1275 52.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 1158.3 1261 54.0
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1146.7 1265 53.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 0.0e+00 1140.2 1263 53.4
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 0.0e+00 1137.1 1213 55.1
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 0.0e+00 1133.6 1213 55.2
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 0.0e+00 1128.2 1214 54.7
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 1119.4 1260 53.6
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 1115.9 1268 52.8
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 0.0e+00 1114.8 1265 52.6
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 0.0e+00 1107.4 1201 53.7
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 0.0e+00 1105.1 1339 50.3
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1100.1 1140 55.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.8e-309 1066.2 1144 54.4
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 1.7e-307 1059.7 1270 52.0
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 8.1e-302 1040.8 1280 51.0
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.2e-300 1036.9 1251 51.5
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.7e-291 1006.5 1257 49.2
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 1.1e-287 993.8 1206 50.2
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.8e-285 986.5 1001 55.1
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.4e-277 960.3 1305 46.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.7e-275 953.4 1194 49.7
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 4.9e-275 951.8 1293 46.6
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 1.5e-271 940.3 1235 47.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 1.1e-269 934.1 1306 44.3
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 4.1e-269 932.2 1211 48.1
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 9.0e-269 931.0 1287 45.6
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 2.9e-267 926.0 1252 46.6
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.2e-266 922.5 1311 45.6
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 5.3e-261 905.2 1298 44.8
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.5e-260 903.7 1300 46.2
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 7.7e-260 901.4 1274 45.4
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 2.0e-252 876.7 1206 45.4
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 6.1e-249 865.1 794 60.5
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 3.9e-248 862.4 1312 42.5
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 1.6e-241 840.5 1209 45.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 3.1e-237 826.2 1276 43.3
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 7.7e-236 821.6 1188 44.6
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 2.0e-228 797.0 1163 44.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.3e-227 793.5 870 52.1
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.5e-223 780.8 1203 44.6
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 3.2e-221 773.1 1210 40.0
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 4.1e-221 772.7 1203 41.9
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 3.4e-215 753.1 1291 39.1
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 3.5e-204 716.5 1247 40.6
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.0e-203 714.9 1130 39.6
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.3e-203 713.8 1219 40.4
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-202 711.4 794 52.4
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 9.9e-199 698.4 1213 40.6
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.9e-197 694.1 1228 39.3
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.6e-196 691.0 1213 39.9
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.3e-195 687.2 1220 39.8
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.8e-192 677.6 1212 40.3
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 6.8e-192 675.6 1213 38.9
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 4.4e-191 672.9 1217 40.7
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 5.8e-191 672.5 1214 38.6
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 4.9e-190 669.5 1215 38.7
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.1e-189 668.3 1215 39.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.3e-179 634.0 1200 36.8
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.5e-170 604.0 1160 37.9
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 2.1e-169 600.9 667 52.2
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.2e-157 560.1 704 51.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.0e-150 538.9 1206 35.7
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.2e-141 507.3 990 38.4
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.4e-128 465.3 523 54.3
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 2.0e-127 461.5 1332 32.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 8.8e-123 446.0 565 49.2
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.2e-108 399.1 1124 30.0
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 2.8e-100 371.3 707 38.9
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 8.6e-86 323.2 706 36.3
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.5e-74 285.8 1505 26.7
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.9e-69 268.9 1604 25.3
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 1.3e-68 266.2 218 72.5
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 6.9e-67 260.4 253 55.7
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 2.3e-62 245.4 331 44.1
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 3.1e-59 235.0 256 50.8
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 9.0e-59 233.4 318 43.7
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 6.2e-52 210.7 1357 25.9
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.0e-51 208.0 203 53.7
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.1e-45 189.9 105 83.8
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 5.7e-45 187.6 221 48.9
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.2e-40 171.8 331 35.6
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 8.7e-38 163.7 259 38.6
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.1e-35 156.8 1244 23.9
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.6e-34 152.1 150 47.3
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 9.4e-32 143.7 278 37.4
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.2e-24 118.6 254 43.7
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 2.0e-21 109.4 228 36.8
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.8e-20 105.5 111 46.8
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 8.2e-20 104.0 86 58.1
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.3e-17 96.7 96 54.2
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 3.8e-17 95.1 153 37.3
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-15 90.1 113 47.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-15 90.1 61 63.9
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 8.0e-15 87.4 156 37.2
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 2.3e-14 85.9 47 91.5
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 6.7e-14 84.3 146 33.6
Cc08_g07630 Coffea canephora HOM05D006523 ORTHO05D008212 2.0e-13 82.8 67 58.2
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 4.4e-13 81.6 135 37.0
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 9.7e-13 80.5 83 55.4
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 2.8e-12 79.0 86 50.0
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 2.4e-11 75.9 176 34.7
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.2e-10 73.6 79 44.3
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.0e-10 72.8 74 45.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.0e-10 72.8 79 43.0
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-08 67.0 406 23.9
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 8.8e-06 57.4 74 47.3


User provided reference genes

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