Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 2.2e-49 199.1 139 100.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 2.3e-30 136.0 112 91.1
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.2e-18 97.1 123 47.2
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 7.6e-18 94.4 113 53.1
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 7.6e-18 94.4 112 61.6
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.6e-18 94.4 112 61.6
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.9e-18 94.0 104 65.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 1.3e-17 93.6 112 58.0
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.2e-17 92.8 112 61.6
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 2.2e-17 92.8 124 70.2
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 3.8e-17 92.0 117 63.2
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 4.9e-17 91.7 113 48.7
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.9e-17 91.7 134 53.0
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.4e-16 90.1 112 61.6
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.9e-16 89.7 112 46.4
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 3.2e-16 89.0 112 44.6
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 5.4e-16 88.2 112 45.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 2.1e-15 86.3 113 46.9
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 2.1e-15 86.3 113 64.6
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.7e-15 85.9 112 61.6
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 4.6e-15 85.1 116 49.1
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 4.6e-15 85.1 114 70.2
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 6.0e-15 84.7 108 48.1
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 7.8e-15 84.3 112 60.7
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.0e-14 84.0 112 48.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 1.0e-14 84.0 104 61.5
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.3e-14 83.6 116 71.6
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.3e-14 83.6 113 59.3
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.7e-14 83.2 116 56.9
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 3.0e-14 82.4 62 66.1
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 3.9e-14 82.0 112 44.6
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 6.6e-14 81.3 104 67.3
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.9e-13 79.7 106 67.9
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 2.5e-13 79.3 112 49.1
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 4.3e-13 78.6 114 57.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 9.6e-13 77.4 62 56.5
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.6e-12 76.6 122 44.3
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 2.1e-12 76.3 113 44.2
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 2.8e-12 75.9 112 41.1
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 1.1e-11 73.9 112 43.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.4e-11 73.6 113 49.6
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 2.4e-11 72.8 112 61.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.4e-11 72.8 114 63.2
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 3.1e-11 72.4 113 39.8
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 3.1e-11 72.4 61 63.9
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 3.1e-11 72.4 112 44.6
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 5.3e-11 71.6 115 56.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 5.3e-11 71.6 112 61.6
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 6.9e-11 71.2 112 38.4
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 9.0e-11 70.9 113 48.7
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 9.0e-11 70.9 113 39.8
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.2e-10 70.5 112 51.8
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.2e-10 70.5 112 52.7
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.5e-10 70.1 112 37.5
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.5e-10 70.1 112 37.5
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.6e-10 69.3 112 40.2
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 3.4e-10 68.9 110 60.9
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 9.9e-10 67.4 113 46.9
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.3e-09 67.0 113 38.1
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.3e-09 67.0 51 58.8
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.7e-09 66.6 112 37.5
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.2e-09 66.2 106 45.3
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.2e-09 66.2 54 50.0
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.9e-09 65.1 108 38.9
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 4.9e-09 65.1 113 45.1
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 6.4e-09 64.7 116 59.5
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 6.4e-09 64.7 56 64.3
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 6.4e-09 64.7 112 37.5
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 1.1e-08 63.9 54 55.6
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-08 63.9 62 50.0
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 2.4e-08 62.8 65 50.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 3.2e-08 62.4 51 56.9
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 5.4e-08 61.6 112 42.9
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.6e-07 60.1 61 52.5
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.6e-07 60.1 42 61.9
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 2.1e-07 59.7 59 45.8
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 2.7e-07 59.3 121 57.9
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 4.6e-07 58.5 53 45.3
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 7.9e-07 57.8 53 60.4
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 7.9e-07 57.8 53 60.4
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.3e-06 57.0 120 48.3
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.7e-06 56.6 102 33.3
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 3.0e-06 55.8 51 51.0


User provided reference genes

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