Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 0.0e+00 1139.8 566 100.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 4.2e-301 1037.3 566 92.4
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 7.8e-287 989.9 566 87.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.1e-285 986.1 565 87.4
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.7e-278 962.2 563 85.8
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 7.3e-277 956.8 571 83.9
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 3.6e-276 954.5 565 84.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 6.2e-276 953.7 564 84.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.1e-275 953.0 569 82.8
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.4e-275 952.6 565 84.2
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 5.2e-275 950.7 564 84.9
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.2e-274 949.5 564 84.6
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.0e-274 948.7 565 84.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.0e-274 948.7 570 83.2
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.0e-274 948.7 565 83.9
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.6e-274 948.3 565 84.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.4e-274 948.0 565 84.1
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 7.5e-274 946.8 565 84.1
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.8e-274 946.4 566 83.4
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.8e-274 946.4 566 83.4
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.9e-273 944.9 565 83.5
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 4.9e-273 944.1 566 83.7
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 6.4e-273 943.7 568 84.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.4e-273 943.7 564 84.2
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 8.3e-273 943.3 539 86.8
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.1e-272 943.0 568 83.8
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.2e-272 941.4 565 83.7
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 4.1e-272 941.0 565 84.1
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.1e-272 940.3 564 84.0
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 9.2e-272 939.9 568 83.5
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 9.2e-272 939.9 566 83.4
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 9.2e-272 939.9 570 82.6
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.2e-271 939.5 563 82.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.6e-271 939.1 566 82.9
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 7.8e-271 936.8 547 85.4
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.3e-270 936.0 561 83.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.3e-270 936.0 556 84.4
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.7e-270 935.6 565 83.0
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 5.1e-270 934.1 568 82.2
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 8.6e-270 933.3 568 82.9
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.1e-269 932.9 568 82.6
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.1e-269 932.9 565 82.7
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 3.3e-269 931.4 565 83.0
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.2e-268 929.5 564 82.3
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.6e-268 927.9 565 82.5
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 4.7e-268 927.5 565 81.2
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.2e-268 927.2 566 82.7
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-267 926.0 566 82.9
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.4e-267 926.0 564 81.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.8e-267 925.6 545 84.6
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.8e-267 925.6 599 79.0
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.8e-267 925.6 565 81.8
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.9e-267 923.3 564 81.4
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.2e-266 922.9 557 82.0
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.6e-266 921.8 563 81.0
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 3.4e-266 921.4 539 85.2
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.4e-266 921.0 567 81.3
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 7.6e-266 920.2 565 82.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 9.9e-266 919.8 556 81.8
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.7e-265 919.1 564 81.7
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.2e-265 918.7 564 80.7
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.9e-265 918.3 553 81.7
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.9e-265 918.3 540 83.3
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 3.7e-265 917.9 540 83.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 3.7e-265 917.9 540 83.3
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.7e-265 917.9 564 82.6
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.9e-265 917.5 565 81.6
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 8.3e-265 916.8 565 80.9
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.1e-264 916.4 567 80.4
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.4e-264 916.0 563 81.3
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 2.4e-264 915.2 568 82.4
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 3.2e-264 914.8 566 81.6
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.1e-264 914.4 566 81.8
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 5.4e-264 914.1 539 84.4
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 7.1e-264 913.7 565 79.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 2.7e-263 911.8 566 80.6
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 6.0e-263 910.6 564 80.3
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.0e-262 909.8 564 80.7
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.0e-262 909.8 564 80.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.3e-262 909.4 565 80.5
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.9e-262 907.9 564 80.7
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 5.1e-262 907.5 539 82.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.6e-262 907.1 588 77.9
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 6.6e-262 907.1 566 79.9
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.9e-261 905.6 566 79.7
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.3e-261 904.8 564 80.3
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.3e-261 904.8 564 80.3
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 7.3e-261 903.7 569 79.8
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 7.3e-261 903.7 565 79.6
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 3.6e-260 901.4 538 82.5
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 4.7e-260 901.0 574 79.3
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.1e-259 899.8 539 82.7
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.1e-259 898.3 564 80.3
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 8.9e-259 896.7 565 78.6
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.1e-256 889.8 538 82.0
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.9e-256 889.0 565 78.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.9e-254 881.3 538 79.7
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 8.7e-254 880.2 566 78.3
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.5e-253 878.6 547 77.5
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.3e-253 878.2 565 76.5
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 7.3e-253 877.1 550 78.0
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 7.6e-250 867.1 562 75.3
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.8e-249 864.8 539 79.2
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.8e-249 864.8 539 79.2
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 6.0e-247 857.4 565 73.8
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 6.4e-241 837.4 540 76.3
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 4.2e-240 834.7 556 75.7
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.2e-239 833.2 565 72.4
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.9e-238 828.2 605 70.6
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.2e-231 806.6 567 70.7
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.9e-229 799.3 548 72.1
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.2e-226 790.0 542 70.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.0e-225 786.9 512 79.3
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 8.4e-225 783.9 545 69.4
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.3e-222 776.5 568 66.4
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.2e-220 769.2 562 66.9
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 5.3e-219 764.6 562 66.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.8e-217 758.4 567 64.7
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.1e-213 746.9 562 66.4
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.3e-213 745.3 564 69.9
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.7e-212 741.9 564 69.3
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 3.8e-209 731.9 455 80.2
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 3.2e-208 728.8 565 69.2
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.2e-204 714.1 564 68.4
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.6e-202 709.1 530 64.2
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.7e-196 688.7 418 83.5
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.7e-185 653.3 547 60.9
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 6.5e-185 651.4 561 57.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 3.6e-183 645.6 458 74.9
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.3e-182 642.9 385 85.7
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 6.6e-177 624.8 383 83.0
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 6.8e-158 561.6 568 54.8
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 3.9e-153 545.8 394 71.6
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.9e-152 543.5 293 90.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 6.4e-148 528.5 530 49.8
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 4.1e-147 525.8 293 85.0
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.4e-139 500.7 314 82.5
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.3e-136 489.6 395 66.8
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 7.9e-130 468.4 549 47.0
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.6e-122 444.1 541 45.5
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-120 438.0 324 71.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 7.4e-96 355.5 172 95.3
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.6e-77 294.7 448 37.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 5.0e-60 236.5 364 41.2
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.9e-59 234.6 452 37.4
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 4.1e-46 190.3 120 75.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 3.6e-42 177.2 93 89.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 4.9e-31 140.2 79 84.8
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.5e-27 127.9 93 64.5
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 2.2e-23 114.8 68 77.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.6e-18 98.6 81 63.0
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.7e-15 88.6 72 63.9
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 9.3e-14 82.8 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.9e-11 75.1 48 66.7
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 2.6e-08 64.7 35 80.0


User provided reference genes

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