Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 0.0e+00 1277.7 725 100.0
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 4.4e-250 868.2 625 76.0
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.2e-178 630.9 735 56.1
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 4.9e-161 572.4 730 52.7
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 4.8e-116 422.9 762 41.9
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.8e-115 421.0 736 43.3
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 5.6e-104 382.9 750 40.5
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 6.8e-94 349.4 745 38.9
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.2e-87 328.6 550 40.2
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.1e-87 327.8 736 37.2
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 2.1e-87 327.8 650 44.0
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.6e-87 327.0 740 37.7
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.2e-86 323.2 742 37.3
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 8.9e-86 322.4 759 38.2
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.2e-84 317.8 757 36.7
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.4e-83 315.1 699 37.3
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.2e-83 313.9 481 45.9
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 1.2e-82 312.0 738 38.6
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.6e-82 311.6 705 38.0
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.6e-82 311.6 697 36.7
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.7e-82 310.8 817 36.1
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.5e-82 310.5 697 38.6
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.6e-79 301.6 739 36.3
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.8e-79 300.8 786 36.4
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 6.8e-78 296.2 434 50.0
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.7e-76 291.6 720 36.8
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.4e-75 288.5 405 47.4
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.2e-74 285.4 422 46.0
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 2.1e-74 284.6 437 45.1
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.7e-74 284.3 446 48.4
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.7e-74 284.3 485 45.4
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 3.5e-74 283.9 736 35.1
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 7.8e-74 282.7 394 50.8
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.7e-73 281.6 700 36.9
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.9e-73 280.4 628 36.5
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 2.5e-72 277.7 385 46.8
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 9.6e-72 275.8 693 35.6
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.5e-69 268.5 704 35.5
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.4e-69 267.3 407 43.2
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 9.9e-69 265.8 441 43.8
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 9.9e-69 265.8 434 45.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.7e-68 265.0 407 44.7
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 3.8e-68 263.8 707 37.9
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.4e-67 261.9 695 35.4
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 1.2e-66 258.8 424 41.3
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 6.0e-66 256.5 700 33.4
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.7e-65 255.0 716 34.6
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.5e-64 251.9 595 35.8
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 1.6e-63 248.4 500 41.2
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 6.2e-63 246.5 707 36.2
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 8.1e-63 246.1 506 40.3
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 1.4e-62 245.4 436 40.6
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.5e-61 241.9 326 49.4
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 2.2e-60 238.0 593 35.1
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 2.2e-60 238.0 425 41.2
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 4.9e-60 236.9 447 40.9
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 3.5e-58 230.7 434 42.2
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 3.5e-58 230.7 739 33.4
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 3.8e-52 210.7 721 30.0
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 2.7e-50 204.5 366 41.8
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.3e-49 202.2 475 34.1
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 8.7e-49 199.5 362 40.3
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.5e-48 198.0 432 37.0
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 4.3e-48 197.2 466 34.3
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.6e-47 195.3 315 43.5
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 2.4e-46 191.4 414 37.4
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 5.3e-46 190.3 422 38.2
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 9.0e-46 189.5 426 37.6
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 3.4e-45 187.6 418 40.2
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 3.4e-45 187.6 396 39.6
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 5.8e-45 186.8 412 35.4
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.5e-43 181.4 650 29.8
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 9.3e-43 179.5 398 41.7
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.2e-42 179.1 400 37.5
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.2e-42 179.1 402 35.3
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 2.1e-42 178.3 415 35.2
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 2.7e-42 177.9 292 42.1
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 2.7e-42 177.9 292 42.1
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 2.7e-42 177.9 413 36.8
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.7e-42 177.9 353 36.5
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 3.5e-42 177.6 286 42.0
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 4.6e-42 177.2 292 42.1
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 4.6e-42 177.2 371 40.2
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 6.1e-42 176.8 290 39.0
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 1.0e-41 176.0 279 40.1
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 1.0e-41 176.0 279 40.1
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 1.8e-41 175.3 286 41.6
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 6.7e-41 173.3 290 39.0
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.1e-40 172.6 460 34.6
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.9e-40 171.8 298 39.6
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.9e-40 171.8 371 39.6
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 2.5e-40 171.4 625 30.9
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 3.3e-40 171.0 322 37.0
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 9.7e-40 169.5 407 37.8
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 4.8e-39 167.2 407 37.8
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 4.8e-39 167.2 294 42.9
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 6.3e-39 166.8 361 39.1
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 8.2e-39 166.4 413 35.8
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.4e-38 165.6 455 36.7
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 3.1e-38 164.5 169 50.9
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 3.4e-37 161.0 320 39.4
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 5.0e-36 157.1 452 34.3
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 8.5e-36 156.4 452 33.4
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 8.5e-36 156.4 282 41.8
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 1.6e-34 152.1 268 41.0
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 6.1e-34 150.2 375 38.1
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 3.3e-32 144.4 298 40.9
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.3e-31 142.5 403 31.0
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.4e-29 134.4 473 31.9
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.7e-28 132.1 440 29.3
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.2e-28 131.7 381 32.8
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 2.5e-27 128.3 240 37.9
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 1.2e-26 125.9 183 42.1
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.1e-26 125.2 272 37.1
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 7.9e-26 123.2 591 28.1
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 3.9e-25 120.9 342 33.6
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 1.7e-20 105.5 168 53.6
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 6.5e-20 103.6 376 28.2
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 3.0e-17 94.7 304 32.2
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 4.4e-16 90.9 159 35.8
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 9.7e-16 89.7 167 34.1
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 3.7e-15 87.8 364 30.5
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 1.1e-14 86.3 166 43.4
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.1e-14 86.3 347 27.7
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 2.4e-14 85.1 160 38.8
Cpa.g.sc23.6 Carica papaya HOM05D005642 ORTHO05D006672 3.1e-14 84.7 413 27.8
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.3e-12 79.3 383 25.1
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 3.2e-11 74.7 89 47.2
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 7.2e-11 73.6 181 33.7
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 7.2e-11 73.6 181 34.8
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 1.4e-09 69.3 179 36.9
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 6.8e-09 67.0 301 25.2
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 3.4e-08 64.7 413 24.7
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.7e-08 63.9 136 40.4
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 6.3e-07 60.5 222 41.9
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 8.3e-07 60.1 213 26.8
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 1.8e-06 58.9 201 26.9
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.4e-06 58.5 98 37.8
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 3.1e-06 58.2 217 32.3
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 5.4e-06 57.4 75 40.0
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 5.4e-06 57.4 215 26.0


User provided reference genes

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