Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21713 Corylus avellana HOM05D002728 ORTHO05D002874 1.1e-50 203.0 102 100.0
QL12p024865 Quercus lobata HOM05D002728 ORTHO05D002874 3.8e-19 98.2 60 80.0
Prupe.1G461400 Prunus persica HOM05D002728 ORTHO05D002874 7.3e-18 94.0 63 73.0
MD15G1109200 Malus domestica HOM05D002728 ORTHO05D002874 6.1e-17 90.9 78 62.8
MD08G1131600 Malus domestica HOM05D002728 ORTHO05D002874 5.2e-16 87.8 63 69.8
Atru.chr7.2627 Acer truncatum HOM05D002728 ORTHO05D002874 3.2e-13 78.6 59 64.4
Dinv09620 Davidia involucrata HOM05D002728 ORTHO05D002874 3.2e-13 78.6 63 63.5
Actinidia14753 Actinidia chinensis HOM05D002728 ORTHO05D002874 3.5e-12 75.1 61 62.3
Manes.03G002500 Manihot esculenta HOM05D002728 ORTHO05D002874 1.0e-11 73.6 78 52.6
Ciclev10009139m.g Citrus clementina HOM05D002728 ORTHO05D002874 1.3e-11 73.2 61 59.0
FAN20G1722 Fragaria x ananassa HOM05D002728 ORTHO05D002874 1.3e-11 73.2 74 50.0
FvH4_2g36940 Fragaria vesca HOM05D002728 ORTHO05D002874 1.7e-11 72.8 74 50.0
FAN27G3346 Fragaria x ananassa HOM05D002728 ORTHO05D002874 3.9e-11 71.6 74 50.0
TWI32G1170 Tripterygium wilfordii HOM05D002728 ORTHO05D002874 3.9e-11 71.6 62 62.9
Actinidia18150 Actinidia chinensis HOM05D002728 ORTHO05D002874 6.6e-11 70.9 62 62.9
FAN15G0233 Fragaria x ananassa HOM05D002728 ORTHO05D002874 6.6e-11 70.9 74 50.0
TAR383G0981 Trochodendron aralioides HOM05D002728 ORTHO05D002874 6.6e-11 70.9 62 56.5
Gohir.A05G065400 Gossypium hirsutum HOM05D002728 ORTHO05D002874 8.6e-11 70.5 62 54.8
CSS0047734 Camellia sinensis var. sinensis HOM05D002728 ORTHO05D002874 1.5e-10 69.7 61 59.0
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.5e-10 69.7 78 53.8
Gorai.009G068800 Gossypium raimondii HOM05D002728 ORTHO05D002874 3.3e-10 68.6 63 52.4
vmacro14225 Vaccinium macrocarpon HOM05D002728 ORTHO05D002874 3.3e-10 68.6 62 54.8
Phvul.001G058500 Phaseolus vulgaris HOM05D002728 ORTHO05D002874 4.3e-10 68.2 63 54.0
Duzib168G0477 Durio zibethinus HOM05D002728 ORTHO05D002874 7.3e-10 67.4 60 58.3
VMungo0647G0359 Vigna mungo HOM05D002728 ORTHO05D002874 1.6e-09 66.2 63 54.0
Gohir.D05G068000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 2.8e-09 65.5 63 50.8
Sed0024156 Sechium edule HOM05D002728 ORTHO05D002874 3.6e-09 65.1 63 58.7
Nn8g38588 Nelumbo nucifera HOM05D002728 ORTHO05D002874 6.2e-09 64.3 79 51.9
Sabra06G0213400 Salix brachista HOM05D002728 ORTHO05D002874 8.0e-09 63.9 62 58.1
Lalb_Chr24g0402451 Lupinus albus HOM05D002728 ORTHO05D002874 1.8e-08 62.8 63 52.4
Lj5g0009231 Lotus japonicus HOM05D002728 ORTHO05D002874 2.3e-08 62.4 63 47.6
Rhsim07G0137300 Rhododendron simsii HOM05D002728 ORTHO05D002874 3.1e-08 62.0 61 55.7
Ca_12874_v3 Cicer arietinum L. HOM05D002728 ORTHO05D002874 5.2e-08 61.2 63 50.8
Dinv42718 Davidia involucrata HOM05D002728 ORTHO05D002874 5.2e-08 61.2 63 50.8
Dinv43383 Davidia involucrata HOM05D002728 ORTHO05D002874 5.2e-08 61.2 63 50.8
Potri.006G275700 Populus trichocarpa HOM05D002728 ORTHO05D002874 6.8e-08 60.8 62 58.1
Cpa.g.sc233.2 Carica papaya HOM05D002728 ORTHO05D002874 8.9e-08 60.5 67 44.8
COL.COLO4_19047 Corchorus olitorius HOM05D002728 ORTHO05D002874 1.2e-07 60.1 55 56.4
Gohir.A13G178000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 1.2e-07 60.1 52 53.8
arahy.Tifrunner.gnm1.ann1.CG00YF Arachis hypogaea HOM05D002728 ORTHO05D002874 1.5e-07 59.7 63 50.8
arahy.Tifrunner.gnm1.ann1.R81B49 Arachis hypogaea HOM05D002728 ORTHO05D002874 1.5e-07 59.7 63 50.8
RcHm_v2.0_Chr6g0304821 Rosa chinensis HOM05D002728 ORTHO05D002874 1.5e-07 59.7 62 53.2
Hund03280 Selenicereus undatus HOM05D002728 ORTHO05D002874 1.5e-07 59.7 60 50.0
Eucgr.C02095 Eucalyptus grandis HOM05D002728 ORTHO05D002874 2.6e-07 58.9 58 46.6
Thecc.09G005900 Theobroma cacao HOM05D002728 ORTHO05D002874 3.4e-07 58.5 63 52.4
CiPaw.07G192700 Carya illinoinensis HOM05D002728 ORTHO05D002874 4.4e-07 58.2 77 50.6
Gohir.D13G186100 Gossypium hirsutum HOM05D002728 ORTHO05D002874 4.4e-07 58.2 52 53.8
Gorai.013G212100 Gossypium raimondii HOM05D002728 ORTHO05D002874 4.4e-07 58.2 52 53.8
MELO3C003638.2 Cucumis melo HOM05D002728 ORTHO05D002874 5.8e-07 57.8 61 52.5
AUR62020619 Chenopodium quinoa HOM05D002728 ORTHO05D002874 7.5e-07 57.4 68 47.1
CsaV3_3G046980 Cucumis sativus L. HOM05D002728 ORTHO05D002874 7.5e-07 57.4 61 52.5
Ah.11g043690 Amaranthus hybridus HOM05D002728 ORTHO05D002874 9.8e-07 57.0 61 49.2
Hma1.2p1_0155F.1_g068590 Hydrangea macrophylla HOM05D002728 ORTHO05D002874 9.8e-07 57.0 78 43.6
Lalb_Chr14g0362241 Lupinus albus HOM05D002728 ORTHO05D002874 9.8e-07 57.0 63 47.6
AUR62009043 Chenopodium quinoa HOM05D002728 ORTHO05D002874 1.3e-06 56.6 68 47.1
AUR62038763 Chenopodium quinoa HOM05D002728 ORTHO05D002874 1.3e-06 56.6 68 47.1
EL10Ac2g03729 Beta vulgaris HOM05D002728 ORTHO05D002874 2.2e-06 55.8 54 50.0
Dinv41242 Davidia involucrata HOM05D002728 ORTHO05D002874 2.9e-06 55.5 81 44.4
Manes.06G023550 Manihot esculenta HOM05D002728 ORTHO05D002874 2.9e-06 55.5 69 44.9
GSVIVG01035537001 Vitis vinifera HOM05D002728 ORTHO05D002874 2.9e-06 55.5 54 64.8
Hma1.2p1_1025F.1_g249360 Hydrangea macrophylla HOM05D002728 ORTHO05D002874 3.7e-06 55.1 75 48.0
Actinidia17316 Actinidia chinensis HOM05D002728 ORTHO05D002874 4.9e-06 54.7 64 46.9
Medtr1g009890 Medicago truncatula HOM05D002728 ORTHO05D002874 6.4e-06 54.3 63 47.6


User provided reference genes

Program Settings