Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 1.1e-122 443.4 227 100.0
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 5.4e-122 441.0 227 99.6
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.2e-110 403.3 228 90.4
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 5.2e-109 397.9 229 90.4
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 8.6e-104 380.6 227 86.3
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.8e-102 375.6 228 82.9
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 1.1e-101 373.6 228 82.5
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 2.4e-101 372.5 227 84.1
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 5.8e-100 367.9 228 82.5
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 7.6e-100 367.5 232 81.0
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.7e-99 366.3 232 82.3
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.7e-99 366.3 230 83.0
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 2.2e-99 365.9 229 84.3
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 1.4e-98 363.2 228 81.1
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.4e-98 363.2 229 82.1
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.4e-98 363.2 229 82.1
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 1.4e-98 363.2 230 81.3
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 1.4e-98 363.2 229 83.8
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 1.9e-98 362.8 228 80.7
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.9e-98 362.8 228 82.5
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.4e-98 362.5 227 80.2
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 4.2e-98 361.7 229 79.5
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 5.4e-98 361.3 228 82.0
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 5.4e-98 361.3 230 81.3
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 7.1e-98 360.9 228 81.6
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 1.2e-97 360.1 230 80.9
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 1.6e-97 359.8 228 81.1
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 4.6e-97 358.2 228 81.1
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.0e-97 357.8 229 81.2
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 7.8e-97 357.5 227 81.5
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.3e-96 356.7 228 79.8
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 1.3e-96 356.7 228 79.8
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 1.7e-96 356.3 228 81.6
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 5.1e-96 354.8 229 82.1
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 6.6e-96 354.4 228 80.3
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 2.5e-95 352.4 227 78.4
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 2.5e-95 352.4 229 80.8
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 3.3e-95 352.1 231 78.4
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 7.3e-95 350.9 229 80.8
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 1.3e-94 350.1 227 80.2
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 1.3e-94 350.1 231 80.5
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 1.6e-94 349.7 229 80.8
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 4.8e-94 348.2 234 79.9
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 6.2e-94 347.8 227 78.4
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 8.1e-94 347.4 232 79.7
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 8.1e-94 347.4 230 79.1
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 2.4e-93 345.9 230 79.6
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 3.1e-93 345.5 225 79.1
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 4.0e-93 345.1 229 78.6
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 5.3e-93 344.7 230 78.7
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 5.3e-93 344.7 231 78.8
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 6.9e-93 344.4 229 78.6
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 6.9e-93 344.4 231 77.5
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 3.4e-92 342.0 231 77.5
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 4.9e-91 338.2 232 75.4
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 6.4e-91 337.8 235 76.6
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 8.4e-91 337.4 230 75.7
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 8.4e-91 337.4 229 75.5
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.9e-90 336.3 232 76.7
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 2.4e-90 335.9 231 76.2
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 3.2e-90 335.5 230 77.0
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 3.2e-90 335.5 232 76.3
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 5.4e-90 334.7 230 74.8
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 5.4e-90 334.7 232 76.3
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 7.1e-90 334.3 226 76.5
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 9.3e-90 334.0 230 74.8
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 9.3e-90 334.0 229 76.4
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 1.2e-89 333.6 229 75.5
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 1.6e-89 333.2 229 76.9
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 2.7e-89 332.4 230 75.2
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 2.7e-89 332.4 230 75.2
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 2.7e-89 332.4 230 75.2
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 2.7e-89 332.4 230 75.2
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 3.5e-89 332.0 230 74.3
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 4.6e-89 331.6 232 74.6
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 6.0e-89 331.3 230 73.5
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 7.8e-89 330.9 230 74.8
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.0e-88 330.5 236 74.6
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.7e-88 329.7 227 75.8
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 2.3e-88 329.3 230 73.5
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 5.1e-88 328.2 227 76.2
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 5.1e-88 328.2 228 74.6
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 1.1e-87 327.0 227 74.4
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 1.5e-87 326.6 230 76.1
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 1.5e-87 326.6 178 88.2
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.9e-87 326.2 227 74.9
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 1.9e-87 326.2 230 73.0
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 3.3e-87 325.5 232 74.1
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 3.3e-87 325.5 232 74.1
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 5.6e-87 324.7 233 74.2
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 7.3e-87 324.3 227 74.0
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 7.3e-87 324.3 227 74.0
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 7.3e-87 324.3 227 74.4
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 7.3e-87 324.3 228 72.8
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 7.3e-87 324.3 228 74.1
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 9.6e-87 323.9 228 75.4
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 9.6e-87 323.9 231 73.6
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.3e-86 323.6 227 75.3
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 1.3e-86 323.6 230 74.8
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.1e-85 320.5 234 73.5
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 2.4e-85 319.3 232 73.3
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 2.4e-85 319.3 229 73.4
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 4.0e-85 318.5 236 74.6
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 2.0e-84 316.2 227 73.1
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.0e-84 316.2 227 73.1
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 3.4e-84 315.5 178 86.0
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 3.8e-83 312.0 234 71.8
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 6.4e-83 311.2 204 80.9
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 1.9e-82 309.7 157 94.9
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 1.9e-82 309.7 218 76.6
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 1.9e-82 309.7 233 70.8
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 4.2e-82 308.5 227 71.4
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 4.2e-82 308.5 227 71.4
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 1.0e-80 303.9 228 69.3
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 5.1e-80 301.6 228 69.3
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 1.3e-78 297.0 215 72.1
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 4.8e-78 295.0 233 68.2
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 8.1e-78 294.3 233 68.2
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 8.4e-75 284.3 217 68.2
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 7.9e-73 277.7 218 67.0
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 6.2e-70 268.1 229 65.9
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 4.5e-68 261.9 226 65.9
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.5e-63 246.9 218 58.3
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.3e-63 245.7 236 55.9
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 9.7e-63 244.2 226 58.0
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 1.6e-62 243.4 203 60.6
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 3.7e-62 242.3 169 70.4
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 4.8e-62 241.9 224 63.4
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 6.3e-62 241.5 222 58.1
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 6.1e-57 224.9 230 53.5
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 8.8e-56 221.1 230 53.5
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 7.4e-55 218.0 151 80.1
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 1.6e-49 200.3 214 51.4
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 4.4e-47 192.2 151 60.3
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.5e-42 176.4 150 68.0
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 4.1e-37 159.1 190 46.3
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 2.3e-32 143.3 77 80.5
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.0e-31 140.2 125 68.0
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 4.1e-29 132.5 127 65.4
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 8.3e-22 108.2 57 84.2
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 5.4e-21 105.5 138 48.6
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.1e-17 93.6 109 59.6
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 3.3e-10 69.7 44 81.8


User provided reference genes

Program Settings