Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 2466.8 1241 100.0
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 0.0e+00 1743.8 1243 74.2
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1508.0 1276 63.1
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 0.0e+00 1411.7 1277 59.8
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 0.0e+00 1371.7 1277 58.7
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 0.0e+00 1356.3 1273 59.0
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 0.0e+00 1340.5 1255 58.6
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 0.0e+00 1337.8 1299 56.6
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 0.0e+00 1324.3 1221 59.0
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 0.0e+00 1292.3 1254 57.8
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 0.0e+00 1288.9 1248 57.9
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 0.0e+00 1264.6 1259 55.8
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 0.0e+00 1245.0 1266 56.1
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 0.0e+00 1229.2 1267 55.3
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 0.0e+00 1223.8 927 67.2
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 0.0e+00 1179.1 1096 58.3
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 0.0e+00 1150.6 1240 53.5
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 0.0e+00 1142.1 837 68.7
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 0.0e+00 1135.2 1294 50.0
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 0.0e+00 1130.2 1214 52.5
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 0.0e+00 1129.4 1225 52.4
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 0.0e+00 1115.1 1238 50.8
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 0.0e+00 1113.6 1324 48.5
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 0.0e+00 1109.0 1335 49.2
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 0.0e+00 1100.9 930 62.7
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 0.0e+00 1098.2 1266 50.5
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 0.0e+00 1093.2 1219 51.6
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 2.4e-309 1065.8 1148 52.0
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 5.4e-309 1064.7 1274 50.4
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.6e-305 1053.1 1243 48.5
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 1.9e-301 1039.6 1264 47.3
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 3.2e-301 1038.9 864 62.0
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 4.6e-300 1035.0 1013 56.9
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 2.3e-299 1032.7 1021 56.6
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 9.0e-296 1020.8 1322 46.5
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 2.9e-294 1015.8 1212 48.5
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 2.5e-293 1012.7 1151 51.7
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 7.4e-290 1001.1 835 60.8
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 7.4e-290 1001.1 1231 48.3
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 2.8e-289 999.2 1059 52.9
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 2.2e-281 973.0 1059 52.0
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.3e-278 963.8 1213 46.7
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 2.5e-277 959.5 1211 46.7
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 9.4e-277 957.6 1226 46.4
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 1.1e-274 950.7 1195 46.2
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 1.4e-272 943.7 949 53.6
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 3.4e-271 939.1 1212 45.6
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.0e-267 927.5 1213 45.6
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 2.9e-262 909.4 725 64.8
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 8.0e-260 901.4 1167 45.8
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 5.9e-255 885.2 1106 45.5
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.5e-253 880.6 843 55.2
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 1.2e-252 877.5 1246 43.5
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 2.3e-251 873.2 830 54.9
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 4.0e-251 872.5 853 53.9
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 2.2e-249 866.7 827 54.8
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 4.1e-248 862.4 1225 43.3
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 1.7e-246 857.1 880 55.1
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 6.8e-243 845.1 1112 45.0
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 2.1e-236 823.5 1197 42.8
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 8.9e-227 791.6 1236 40.9
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 5.2e-211 739.2 1208 38.7
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.1e-208 731.5 814 51.4
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 2.7e-207 726.9 1212 40.1
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 1.1e-203 714.9 1205 39.8
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 3.5e-199 699.9 643 56.9
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.7e-185 654.4 819 48.5
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 5.6e-181 639.4 1090 37.3
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 7.4e-181 639.0 878 42.4
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 1.6e-180 637.9 937 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 7.9e-167 592.4 966 38.7
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 6.7e-166 589.3 761 42.0
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.8e-163 581.3 666 48.2
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 7.9e-159 565.8 514 58.9
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 2.0e-157 561.2 474 62.0
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 1.8e-155 554.7 534 55.8
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 4.0e-118 430.6 621 43.2
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 1.4e-83 315.8 654 36.5
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 6.2e-79 300.4 362 43.9
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 6.4e-76 290.4 800 28.1
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 3.0e-73 281.6 188 73.4
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 3.6e-71 274.6 887 27.6
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.8e-71 274.2 596 34.4
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 2.2e-52 212.2 223 52.5
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 6.5e-52 210.7 223 52.0
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 7.2e-51 207.2 223 51.6
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 1.2e-50 206.5 366 38.8
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 1.3e-44 186.4 580 28.3
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.7e-34 152.1 114 66.7
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 3.9e-33 148.3 223 41.3
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 6.3e-31 141.0 182 47.8
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.4e-30 139.8 290 34.8
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 2.4e-30 139.0 101 66.3
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.7e-28 132.9 96 71.9
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 2.2e-28 132.5 88 73.9
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 8.5e-28 130.6 89 71.9
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.5e-27 129.8 90 72.2
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 5.5e-27 127.9 339 31.0
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 2.2e-23 115.9 673 22.7
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 8.8e-17 94.0 59 71.2
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 3.4e-16 92.0 88 53.4
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 2.8e-15 89.0 722 20.8
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 4.5e-13 81.6 112 41.1
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 2.3e-12 79.3 63 65.1
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 3.6e-10 72.0 536 22.4
Eucgr.B02786 Eucalyptus grandis HOM05D001641 ORTHO05D001667 4.7e-10 71.6 100 41.0
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 3.0e-09 68.9 216 27.8
Ciclev10013272m.g Citrus clementina HOM05D007125 ORTHO05D008766 8.9e-09 67.4 63 61.9
MCO06G281 Micromonas commoda HOM05D037949 ORTHO05D034420 2.0e-08 66.2 296 26.7
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 2.6e-08 65.9 69 49.3
Cre12.g489750 Chlamydomonas reinhardtii HOM05D015011 ORTHO05D017325 3.4e-08 65.5 172 25.6
AagrBONN_evm.TU.Sc2ySwM_228.2040 Anthoceros agrestis HOM05D015011 ORTHO05D017325 4.4e-08 65.1 269 22.7
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 7.5e-08 64.3 188 29.3
PRCOL_00002272 Prasinoderma coloniale HOM05D037949 ORTHO05D034420 1.7e-07 63.2 185 27.0
THA.LOC104805829 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 4.9e-07 61.6 118 28.8
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 1.1e-06 60.5 170 25.3
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 1.4e-06 60.1 118 30.5


User provided reference genes

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