Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 7.5e-199 697.2 407 100.0
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 4.4e-191 671.4 407 94.6
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 3.6e-161 572.0 410 84.9
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.5e-151 540.0 418 79.2
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.5e-146 522.7 409 74.6
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.7e-140 502.7 409 75.1
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 3.0e-139 499.2 415 72.5
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.9e-138 496.5 409 72.4
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 7.4e-138 494.6 409 74.6
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.1e-136 489.2 405 72.3
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.5e-135 486.9 418 73.0
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 4.5e-135 485.3 412 72.1
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 4.9e-134 481.9 412 70.9
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.9e-133 479.9 412 73.1
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 7.1e-133 478.0 418 69.9
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.5e-132 475.7 411 71.0
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 8.7e-131 471.1 409 70.4
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.6e-129 466.8 409 69.9
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 3.7e-129 465.7 409 72.4
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 3.7e-129 465.7 411 70.6
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 4.8e-129 465.3 409 69.7
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.8e-128 463.4 409 72.1
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.8e-128 463.4 411 71.5
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.8e-128 463.4 410 70.0
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-128 463.0 409 72.1
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.0e-128 462.2 416 69.2
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 5.3e-128 461.8 409 71.6
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 5.3e-128 461.8 409 69.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.6e-127 459.5 418 68.9
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.6e-127 459.5 416 69.7
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.4e-127 459.1 354 74.3
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 8.4e-126 454.5 403 73.0
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 8.4e-126 454.5 428 67.3
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.9e-125 453.4 409 68.2
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 5.5e-125 451.8 411 70.6
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 9.3e-125 451.1 354 73.7
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 2.1e-124 449.9 409 66.3
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.7e-124 449.5 412 68.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 2.7e-124 449.5 410 68.3
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 3.5e-124 449.1 417 67.6
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.6e-124 448.7 354 73.4
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.6e-124 448.7 414 66.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 8.7e-123 444.5 413 69.7
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 8.7e-123 444.5 431 66.6
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.9e-122 443.4 412 69.2
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.5e-122 443.0 411 68.4
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 3.3e-122 442.6 414 68.4
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.3e-122 442.6 411 68.1
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.2e-121 439.9 410 68.5
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 2.2e-121 439.9 412 66.7
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 4.8e-121 438.7 413 69.7
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.1e-120 437.6 408 68.4
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.4e-120 436.4 410 66.3
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 4.1e-120 435.6 410 68.0
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.5e-119 433.7 415 64.8
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.6e-119 433.0 409 66.0
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 4.5e-119 432.2 411 66.7
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 7.7e-119 431.4 410 66.6
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 7.7e-119 431.4 410 67.6
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.7e-118 430.3 410 68.5
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.2e-118 429.9 411 66.7
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 3.8e-118 429.1 412 66.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.5e-118 428.3 409 67.0
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.1e-117 427.6 409 65.5
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-117 427.2 410 68.5
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.9e-117 426.8 341 73.6
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.5e-117 426.4 412 64.3
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.2e-117 425.6 409 64.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 7.2e-117 424.9 405 68.1
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 9.4e-117 424.5 413 66.6
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.6e-116 423.7 406 65.3
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.6e-116 423.7 410 66.8
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.1e-116 423.3 409 65.0
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 2.1e-116 423.3 432 65.3
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.7e-116 422.9 409 67.2
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 4.6e-116 422.2 411 65.7
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.1e-116 421.8 409 65.0
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 6.1e-116 421.8 424 65.3
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.0e-115 421.0 409 68.0
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 3.9e-115 419.1 409 62.6
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 5.1e-115 418.7 438 61.6
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 6.7e-115 418.3 432 64.1
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 4.3e-114 415.6 431 64.3
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 7.4e-114 414.8 409 66.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 2.8e-113 412.9 410 66.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 4.8e-113 412.1 409 65.8
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.2e-113 411.4 395 65.1
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 5.3e-112 408.7 409 63.6
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 9.1e-112 407.9 437 62.0
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.2e-111 407.5 332 69.3
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 2.0e-111 406.8 431 62.6
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.0e-111 406.8 408 64.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 2.0e-111 406.8 340 68.8
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 4.5e-111 405.6 425 63.3
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 4.5e-111 405.6 425 63.3
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 7.7e-111 404.8 407 62.4
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 6.5e-110 401.7 425 63.1
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.4e-109 400.6 407 63.1
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.2e-108 397.5 413 64.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.1e-108 396.7 411 64.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 2.1e-108 396.7 410 62.4
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 6.1e-108 395.2 408 62.5
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.4e-107 394.0 317 75.1
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.8e-107 393.7 409 64.8
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.0e-107 392.9 408 60.5
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.9e-107 392.5 412 61.9
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 6.7e-107 391.7 425 63.1
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.6e-106 389.8 435 60.9
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.2e-105 386.7 349 69.3
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.2e-105 386.7 340 69.4
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.1e-104 384.4 429 62.9
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 7.0e-104 381.7 411 63.5
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 3.5e-103 379.4 334 67.4
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.0e-102 377.9 339 70.5
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.2e-97 360.1 415 58.3
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.4e-96 356.7 409 56.2
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.4e-96 356.7 330 68.8
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 9.1e-96 354.8 407 60.7
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.6e-95 354.0 434 56.5
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 7.7e-95 351.7 349 64.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.0e-91 341.3 420 57.6
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 5.0e-86 322.4 379 54.1
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 5.5e-77 292.4 421 48.7
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 2.1e-76 290.4 343 54.5
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 8.0e-76 288.5 401 53.6
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 8.0e-76 288.5 349 58.2
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.8e-75 285.4 406 53.0
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.2e-73 280.4 399 53.4
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 5.0e-70 269.2 344 50.0
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-63 248.1 247 65.6
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.3e-62 243.8 362 48.6
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.9e-61 240.7 321 54.5
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 7.8e-55 218.8 229 61.6
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 7.3e-53 212.2 211 62.1
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 9.5e-53 211.8 268 56.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 9.5e-53 211.8 268 56.7
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.4e-49 199.1 219 57.5
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 9.2e-48 195.3 251 52.2
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.6e-47 194.5 424 41.7
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-46 191.0 177 59.9
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.8e-42 176.0 320 44.1
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 2.7e-39 167.2 382 40.1
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 7.8e-39 165.6 382 39.3
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.8e-35 154.5 205 52.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 9.0e-35 152.1 393 35.9
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.4e-34 149.8 340 41.5
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 3.2e-32 143.7 104 76.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.7e-30 137.9 110 70.0
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.1e-29 135.2 196 48.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.1e-27 128.6 152 61.8
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.3e-22 110.9 246 32.9
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.1e-16 92.0 125 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.3e-12 78.6 236 28.4


User provided reference genes

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