Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 2.2e-57 225.3 106 100.0
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 5.3e-56 220.7 104 99.0
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.3e-49 199.5 102 95.1
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 9.5e-45 183.3 102 86.3
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 9.5e-45 183.3 102 86.3
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.2e-44 183.0 102 85.3
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.6e-44 182.6 102 86.3
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 2.1e-44 182.2 102 84.3
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.0e-43 179.9 102 84.3
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 3.0e-43 178.3 102 83.3
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 5.2e-43 177.6 102 83.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-42 176.4 102 82.4
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-42 176.4 102 82.4
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.5e-42 176.0 102 82.4
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 2.6e-42 175.3 102 81.4
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.6e-42 175.3 102 81.4
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.6e-42 175.3 102 81.4
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 4.4e-42 174.5 102 80.4
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 5.7e-42 174.1 102 81.4
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 9.8e-42 173.3 102 77.5
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 9.8e-42 173.3 102 82.4
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 9.8e-42 173.3 102 84.3
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.2e-41 172.2 102 80.4
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 2.8e-41 171.8 102 80.4
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 3.7e-41 171.4 102 79.4
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 3.7e-41 171.4 102 80.4
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 3.7e-41 171.4 102 79.4
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.7e-41 171.4 102 78.4
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 4.9e-41 171.0 102 77.5
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 6.3e-41 170.6 102 80.4
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 6.3e-41 170.6 102 80.4
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 8.3e-41 170.2 102 77.5
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.8e-40 169.1 102 78.4
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 2.4e-40 168.7 102 76.5
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.4e-40 168.7 102 78.4
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.4e-40 168.7 102 78.4
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 2.4e-40 168.7 102 78.4
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 2.4e-40 168.7 102 76.5
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 3.1e-40 168.3 102 77.5
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 4.1e-40 167.9 102 77.5
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 4.1e-40 167.9 102 76.5
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 5.4e-40 167.5 102 78.4
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 5.4e-40 167.5 102 78.4
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 5.4e-40 167.5 102 76.5
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 7.0e-40 167.2 102 75.5
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 7.0e-40 167.2 102 79.4
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 7.0e-40 167.2 102 77.5
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 9.2e-40 166.8 102 77.5
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 9.2e-40 166.8 102 76.5
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 9.2e-40 166.8 102 77.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.2e-39 166.4 102 76.5
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 2.0e-39 165.6 102 75.5
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 3.5e-39 164.9 102 77.5
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 4.5e-39 164.5 102 75.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 4.5e-39 164.5 102 77.5
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 5.9e-39 164.1 102 74.5
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 7.8e-39 163.7 102 74.5
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 7.8e-39 163.7 102 74.5
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 7.8e-39 163.7 102 75.5
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.0e-38 163.3 102 75.5
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.0e-38 163.3 103 74.8
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.3e-38 162.9 102 75.5
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.7e-38 162.5 102 76.5
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-38 162.5 99 77.8
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.7e-38 162.5 102 74.5
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.7e-38 162.5 102 75.5
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.3e-38 162.2 102 77.5
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.3e-38 162.2 102 76.5
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 3.8e-38 161.4 102 76.5
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 3.8e-38 161.4 102 75.5
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 5.0e-38 161.0 102 76.5
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 8.6e-38 160.2 102 71.6
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.1e-37 159.8 102 73.5
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.1e-37 159.8 102 75.5
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.1e-37 159.8 102 75.5
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.9e-37 159.1 102 74.5
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.5e-37 158.7 102 75.5
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.3e-37 158.3 102 73.5
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.3e-37 158.3 102 72.5
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 5.6e-37 157.5 102 73.5
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 7.3e-37 157.1 102 71.6
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.2e-36 156.4 102 69.6
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 1.6e-36 156.0 102 71.6
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.6e-36 156.0 102 73.5
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 4.7e-36 154.5 102 73.5
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 8.0e-36 153.7 79 94.9
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.4e-35 152.9 102 72.5
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 1.4e-35 152.9 102 71.6
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 1.8e-35 152.5 102 72.5
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 2.3e-35 152.1 102 73.5
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 8.9e-35 150.2 102 70.6
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 1.2e-34 149.8 102 70.6
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.5e-34 149.4 102 69.6
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.5e-34 149.4 102 69.6
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 1.5e-34 149.4 102 69.6
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.5e-34 149.4 102 69.6
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.5e-34 149.4 102 69.6
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 2.6e-34 148.7 102 70.6
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.3e-33 146.4 102 69.6
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.3e-33 146.4 102 72.5
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.7e-33 146.0 101 68.3
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.1e-32 143.3 102 64.7
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 4.1e-32 141.4 102 63.7
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 4.1e-32 141.4 102 65.7
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.2e-31 139.8 108 64.8
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.2e-31 139.8 108 64.8
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 2.0e-31 139.0 108 63.9
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 2.0e-31 139.0 108 63.9
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 4.6e-31 137.9 102 59.8
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 7.8e-31 137.1 101 60.4
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 7.8e-31 137.1 101 60.4
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 2.3e-30 135.6 108 63.9
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 3.0e-30 135.2 102 62.7
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-29 132.9 77 81.8
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-29 132.9 77 81.8
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-29 132.9 77 81.8
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-29 132.9 77 81.8
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-29 132.9 99 63.6
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.3e-29 131.3 79 78.5
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 7.3e-29 130.6 103 62.1
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 4.7e-28 127.9 102 58.8
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 4.7e-28 127.9 101 55.4
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-27 125.9 134 49.3
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 7.5e-26 120.6 87 66.7
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.4e-24 115.5 102 52.9
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 3.2e-24 115.2 102 52.0
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 3.2e-24 115.2 104 52.9
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 5.2e-19 97.8 100 51.0
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 9.8e-18 93.6 100 49.0
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.2e-16 88.6 54 72.2
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 5.4e-16 87.8 77 58.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.6e-15 86.3 45 86.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.9e-14 81.6 117 40.2
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 8.1e-12 73.9 40 80.0
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 4.0e-11 71.6 45 71.1


User provided reference genes

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