Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 5.8e-129 464.2 222 100.0
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 6.9e-114 414.1 222 88.7
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 2.6e-113 412.1 222 86.9
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 6.5e-112 407.5 222 84.7
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 2.1e-110 402.5 222 83.8
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 2.7e-110 402.1 222 82.9
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 7.9e-110 400.6 215 89.3
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 3.9e-109 398.3 222 82.9
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 8.7e-109 397.1 222 83.3
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 3.3e-108 395.2 222 80.6
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 7.4e-108 394.0 222 80.6
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 1.6e-107 392.9 222 79.7
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 2.1e-107 392.5 222 81.5
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 2.8e-107 392.1 222 81.1
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 2.8e-107 392.1 222 82.0
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 4.8e-107 391.3 221 80.5
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 1.4e-106 389.8 222 79.7
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 2.4e-106 389.0 222 80.2
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 5.3e-106 387.9 222 80.2
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 5.3e-106 387.9 222 79.7
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 9.0e-106 387.1 222 80.2
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 1.5e-105 386.3 222 79.3
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.5e-105 386.3 222 81.1
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 1.5e-105 386.3 222 81.1
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 1.5e-105 386.3 222 79.3
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 2.6e-105 385.6 222 78.4
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 2.6e-105 385.6 222 79.3
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 4.5e-105 384.8 222 77.9
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 5.9e-105 384.4 222 78.8
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 1.0e-104 383.6 222 78.8
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.7e-104 382.9 222 77.5
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 1.7e-104 382.9 222 77.5
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 2.2e-104 382.5 222 78.4
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 2.9e-104 382.1 222 77.9
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.8e-104 381.7 222 79.3
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 3.8e-104 381.7 222 78.8
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 5.0e-104 381.3 222 77.5
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 6.5e-104 380.9 222 78.4
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.1e-103 380.2 222 78.8
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 1.1e-103 380.2 222 78.8
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 1.1e-103 380.2 222 76.6
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 1.9e-103 379.4 222 78.8
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 5.5e-103 377.9 222 78.8
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 7.2e-103 377.5 222 77.9
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 7.2e-103 377.5 222 77.9
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 7.2e-103 377.5 222 76.6
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 7.2e-103 377.5 222 76.6
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 7.2e-103 377.5 222 77.5
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.2e-102 376.7 222 77.5
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.1e-102 375.9 222 77.5
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 4.6e-102 374.8 222 76.6
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 6.1e-102 374.4 222 76.1
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 7.9e-102 374.0 222 77.0
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 1.0e-101 373.6 222 76.1
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 1.3e-101 373.2 222 77.0
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.3e-101 373.2 222 77.0
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 3.9e-101 371.7 222 77.0
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 8.7e-101 370.5 222 77.0
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 1.1e-100 370.2 248 71.8
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 3.3e-100 368.6 222 76.1
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 2.8e-99 365.5 224 75.9
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 3.7e-99 365.2 222 75.2
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 6.3e-99 364.4 222 74.3
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 6.3e-99 364.4 222 74.3
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.4e-98 363.2 223 76.2
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.4e-98 363.2 223 76.2
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 4.1e-98 361.7 222 73.0
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 9.0e-98 360.5 222 73.0
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.0e-97 359.4 251 68.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 2.0e-97 359.4 222 74.3
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 2.6e-97 359.0 222 73.9
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 4.5e-97 358.2 222 73.0
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 1.0e-96 357.1 222 73.0
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.7e-96 356.3 223 75.3
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 2.2e-96 355.9 222 71.6
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 2.2e-96 355.9 222 71.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 2.2e-96 355.9 222 71.6
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 2.2e-96 355.9 219 72.6
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 3.8e-96 355.1 222 71.6
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 3.8e-96 355.1 274 62.8
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 3.8e-96 355.1 223 73.1
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 6.5e-96 354.4 223 73.5
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 1.1e-95 353.6 222 70.7
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 2.5e-95 352.4 222 72.1
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 2.5e-95 352.4 222 72.1
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 2.5e-95 352.4 222 70.7
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 3.2e-95 352.1 222 72.1
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 3.2e-95 352.1 219 72.1
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 7.2e-95 350.9 223 72.2
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 1.6e-94 349.7 222 69.4
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 2.1e-94 349.4 222 71.6
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 2.7e-94 349.0 222 69.8
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 3.6e-94 348.6 222 71.6
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 7.9e-94 347.4 222 68.9
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 1.8e-93 346.3 222 68.9
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 2.3e-93 345.9 222 69.4
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 3.9e-93 345.1 222 69.8
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 4.8e-91 338.2 222 68.5
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.4e-90 335.9 224 71.4
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.5e-89 333.2 192 80.2
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 2.0e-89 332.8 186 81.7
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.7e-89 330.9 255 62.4
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 6.5e-88 327.8 223 68.2
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 3.6e-86 322.0 222 64.0
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 2.3e-85 319.3 222 65.8
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 1.8e-82 309.7 219 64.8
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.0e-80 301.6 223 63.2
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 8.5e-80 300.8 220 62.3
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 8.0e-78 294.3 174 79.9
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.5e-71 272.7 163 75.5
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.2e-65 253.8 189 61.9
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.7e-64 250.0 146 74.7
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 9.2e-58 227.6 229 48.9
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 8.6e-56 221.1 223 49.3
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 2.5e-55 219.5 223 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 4.3e-55 218.8 223 48.9
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 3.9e-32 142.5 179 43.0
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.5e-23 114.0 74 70.3
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 6.9e-21 105.1 68 69.1
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 4.2e-18 95.9 197 29.4
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.2e-17 94.4 243 25.5
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 3.9e-16 89.4 56 71.4
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 4.0e-13 79.3 87 49.4
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-12 77.8 49 75.5
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.2e-10 69.3 61 59.0
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.2e-09 67.8 45 71.1
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 2.7e-09 66.6 41 70.7
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 1.5e-07 60.8 73 45.2


User provided reference genes

Program Settings