Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 9.4e-275 949.5 456 100.0
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 8.8e-257 889.8 462 92.6
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.0e-216 755.7 462 77.5
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.4e-201 705.7 541 65.2
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 5.3e-185 651.4 461 65.3
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 4.2e-182 641.7 463 65.7
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.2e-181 640.2 459 64.5
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 3.5e-181 638.6 463 65.4
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.1e-179 633.6 461 63.8
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.1e-177 627.1 462 63.6
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.6e-176 622.5 460 64.1
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.0e-172 610.5 458 64.2
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.0e-172 610.5 422 67.3
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.1e-171 607.1 460 63.3
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 9.0e-169 597.4 458 60.5
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.4e-168 595.5 457 61.3
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.2e-165 587.0 453 60.5
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.6e-165 585.1 462 58.4
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.9e-164 582.0 455 60.0
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.4e-161 572.8 461 58.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 5.3e-161 571.6 461 59.0
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 1.7e-159 566.6 439 61.7
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 2.5e-158 562.8 405 64.9
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 7.2e-158 561.2 462 59.1
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 2.6e-155 552.7 462 58.0
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 5.7e-155 551.6 460 57.2
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 2.8e-154 549.3 464 56.7
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 4.1e-153 545.4 458 57.0
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 6.9e-153 544.7 465 59.4
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.2e-152 543.9 459 55.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.6e-152 542.7 507 53.5
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.7e-151 540.0 458 54.1
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.4e-150 537.0 458 53.9
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.5e-150 536.2 457 55.6
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 2.1e-149 533.1 456 57.9
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 2.1e-149 533.1 458 54.1
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 6.1e-149 531.6 458 54.1
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.4e-148 530.4 459 55.3
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.4e-145 520.4 462 51.5
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.6e-144 516.9 470 53.2
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 7.7e-144 514.6 455 52.7
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.7e-143 513.5 466 53.0
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.2e-143 513.1 455 52.5
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 6.5e-143 511.5 454 53.1
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.7e-138 496.9 453 52.1
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 9.1e-137 491.1 454 51.8
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.7e-135 486.9 452 52.4
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.7e-133 479.6 465 51.8
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 8.0e-133 478.0 464 51.3
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.8e-132 476.9 455 50.8
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.0e-132 475.7 454 52.0
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.1e-129 467.6 456 51.3
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.1e-129 466.1 456 51.1
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 7.0e-129 464.9 473 50.5
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.6e-128 463.8 456 50.9
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.7e-128 463.0 481 49.1
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 9.5e-126 454.5 463 48.4
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.0e-123 446.8 461 47.5
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 2.6e-123 446.4 460 48.0
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 5.7e-123 445.3 462 50.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.3e-122 444.1 460 47.6
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 1.7e-122 443.7 434 52.3
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 8.3e-122 441.4 460 47.6
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.1e-121 441.0 457 50.1
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 4.1e-121 439.1 457 50.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.7e-120 436.4 461 46.6
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 4.5e-120 435.6 461 46.4
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 3.8e-119 432.6 374 55.6
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 3.8e-119 432.6 381 56.7
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 5.0e-119 432.2 373 55.5
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.1e-118 431.0 461 46.4
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-118 430.6 523 45.7
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.5e-118 429.9 466 48.1
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 2.5e-118 429.9 447 49.2
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 8.9e-116 421.4 461 45.6
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.7e-114 416.0 496 42.7
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.9e-114 415.6 462 45.0
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.8e-113 413.7 377 54.6
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.6e-112 410.6 482 46.1
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.7e-112 409.8 492 42.9
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 6.6e-111 405.2 391 50.9
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.2e-109 398.7 466 44.6
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 8.0e-109 398.3 452 45.1
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.1e-105 386.0 415 45.8
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 9.5e-102 374.8 447 42.5
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.8e-101 373.2 476 40.8
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 3.6e-101 372.9 471 42.9
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.1e-100 371.3 470 42.6
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 3.1e-100 369.8 465 42.2
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 3.1e-100 369.8 453 42.4
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 6.8e-100 368.6 451 43.7
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.6e-99 366.7 464 43.3
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.6e-99 366.7 464 43.3
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 5.8e-99 365.5 452 43.1
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.8e-99 365.5 452 44.0
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 9.9e-99 364.8 468 42.3
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.3e-98 364.4 470 42.1
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.7e-98 364.0 450 42.2
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 2.2e-98 363.6 459 45.5
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 4.9e-98 362.5 451 41.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.9e-97 360.5 473 41.4
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 3.2e-97 359.8 450 41.6
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.1e-97 359.4 450 41.8
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.0e-95 354.8 304 57.6
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.3e-95 353.6 457 42.0
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.1e-94 351.3 450 40.4
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.5e-94 350.9 455 40.4
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.5e-94 350.1 459 44.0
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 4.3e-94 349.4 449 39.4
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 5.6e-94 349.0 453 42.2
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.6e-93 347.4 458 43.9
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.1e-93 347.1 461 41.2
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.4e-92 343.6 386 45.9
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.3e-90 337.8 255 63.5
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 6.4e-90 335.5 457 40.9
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 6.4e-90 335.5 457 40.9
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 4.1e-89 332.8 456 41.0
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 4.1e-89 332.8 457 39.8
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.2e-88 331.3 260 60.0
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 3.5e-88 329.7 456 40.8
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.3e-87 327.8 454 39.2
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 5.6e-86 322.4 462 39.8
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 4.4e-83 312.8 458 38.0
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.8e-83 312.4 319 48.9
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.3e-82 311.2 262 58.4
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 2.1e-80 303.9 451 38.4
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.0e-80 302.4 333 47.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 3.3e-78 296.6 424 41.3
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 9.6e-78 295.0 461 36.7
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.6e-77 293.1 311 47.6
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 5.3e-76 289.3 481 33.7
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 2.6e-75 287.0 494 34.6
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 7.6e-75 285.4 482 36.5
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 4.9e-74 282.7 487 36.3
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 8.4e-74 282.0 378 40.5
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 3.2e-73 280.0 457 36.8
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 7.1e-73 278.9 308 47.7
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 9.0e-68 261.9 295 46.1
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 7.6e-67 258.8 270 48.1
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.3e-66 258.1 294 45.2
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 7.1e-65 252.3 448 32.6
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 7.9e-64 248.8 507 33.1
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.5e-62 244.6 355 39.2
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 8.4e-58 228.8 291 46.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 4.6e-48 196.4 178 54.5
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.3e-46 189.9 136 65.4
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.7e-45 188.0 196 50.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.3e-45 186.0 292 36.6
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 8.5e-42 175.6 155 55.5
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.3e-37 159.5 194 44.3
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 4.1e-28 130.2 196 36.2
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 7.0e-28 129.4 426 26.8
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 3.5e-27 127.1 84 72.6
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 5.0e-26 123.2 71 83.1
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 6.5e-26 122.9 303 29.7
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.2e-21 107.8 121 46.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.9e-18 97.4 157 33.8
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 1.1e-17 95.5 61 70.5
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.5e-17 94.4 138 37.0
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 8.0e-16 89.4 82 41.5
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.4e-12 77.8 110 40.0
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 3.1e-12 77.4 87 41.4
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 4.1e-12 77.0 62 58.1
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 5.4e-12 76.6 64 53.1
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-10 72.0 97 48.5
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 4.2e-09 67.0 96 44.8
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 8.0e-08 62.8 39 69.2


User provided reference genes

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